FC921299

Overview
NameFC921299
Unique NameFC921299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921299_ssr420 microsatellite FC921299_ssr420:420..431. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14287 contig Ccv1_Contig14287:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921299 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 55/207 (26.57%), Postives = 88/207 (42.51%), Query Frame = 1
Query:   64 VNFFLSICLLKSAPMAKALSVLNLPAHVAPRRNHSRPSLSYRPMMVTMAMSTPNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVL 684
            ++FFLS  + K       LS+    + +  +      S S     V  + S+    K+Y       +   L  A            MR+ + A    + P LC+AACEL GG                  S +H++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A++    G +S RI+RV+ E+ + +GS+ L
Sbjct:   15 ISFFLSGTIRKPIFSCSRLSI----SAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGL 214          
BLAST of FC921299 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 48/151 (31.79%), Postives = 69/151 (45.70%), Query Frame = 1
Query:  232 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVL 684
            KSY       I   L  A            MR+ + A    + PALC+AACELVGG+                 S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A S      +S RI+R + E+ +A+G++ L
Sbjct:   80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGL 227          
BLAST of FC921299 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  322 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVL 684
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E LAS+ +    +  R++R + E+ +A+G++ L
Sbjct:  107 MRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGL 226          
BLAST of FC921299 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 51/193 (26.42%), Postives = 84/193 (43.52%), Query Frame = 1
Query:  145 VAPRRNHSRPSLSYRPMMVTMAMST-------------PNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQVL 684
            + P+ N  RP   + P+ V+   +T             P   K Y T     +   L +A            MR+ + A    + P LC+AACELVGG++E               S IH++LP  D   L  + KPT +  +  +  +L  D++L F  E + +S   AG    RI+  + E+ +++G++ L
Sbjct:   40 INPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIVGAVAELAKSIGTEGL 226          
BLAST of FC921299 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 48/180 (26.67%), Postives = 76/180 (42.22%), Query Frame = 1
Query:  151 PRRNHSRPSLSYRPMMVTMAMSTPNKN----KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAP-ALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS 675
            P + H+ P       + + + S P       ++YWT++  +I   L +A            MR+ V A     AP  +CVAACEL GG R                S IH++LP  D    + + KP+ +  +     +L  DA+ P   + + S   P       ILR++ E+ R +GS
Sbjct:   17 PEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGS 195          
The following BLAST results are available for this feature:
BLAST of FC921299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GGPPS_CATRO4.609e-1226.57Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR1.027e-1131.79Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.341e-1133.06Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CAPAN2.987e-1126.42Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGR_ARATH8.691e-1126.67Geranylgeranyl pyrophosphate synthase-related prot... [more]
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Properties
Property NameValue
Genbank descriptionC32103D05EF RVDevelopN Citrus clementina cDNA clone C32103D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921299 ID=FC921299; Name=FC921299; organism=Citrus clementina; type=EST; length=715bp
GAAAACTCATAATTTTTCTCCACCCAATCCTTTCTCTCCTTCACTCACCT
TTCTTCGTATATAGTTAATTTCTTCCTTTCTATTTGTCTTTTGAAGTCTG
CACCAATGGCTAAAGCCCTCTCTGTTTTAAACCTACCGGCTCATGTTGCC
CCTAGGCGAAATCACAGCCGTCCATCATTGTCCTACAGACCTATGATGGT
CACCATGGCCATGTCCACACCCAACAAGAATAAATCATATTGGACGTCTG
TACATGAGGATATTGGGGCCCACCTCCGGCAGGCCGTCGTCGTAAAGGAG
CCGGTAGAAGTTTACGAGCCCATGCGCCATTTTGTCTTCGCCGCCCCAGT
CAACATGGCGCCCGCGCTGTGTGTGGCAGCCTGTGAGCTCGTCGGGGGCC
ACCGCGAACAAGCCATTGTTGCTGCTGCTGCTTTGCACGTCATGCATGCA
GCTTCTTTCATTCATGAAAATCTTCCACTATCAGATAGGACTAGTCTTAT
CCCCAAATCCAAGCCCACGATGTATCACGCTTTCAAACCAAATACGGAGC
TTCTCGTGGCTGATGCAATGCTTCCGTTTGGGCTGGAGTTGTTGGCCAGC
TCCGACAACCCGGCCGGAAACAACTCGGGTCGGATTTTACGTGTGATGGT
TGAGATGACACGCGCCATGGGATCACAGGTGTTGTGGAGGGCAGTACATG
AGCTACATGTAGTCA
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