FC921304

Overview
NameFC921304
Unique NameFC921304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921304_ssr13 microsatellite FC921304_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
FC921304_ssr28 microsatellite FC921304_ssr28:28..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14288 contig Ccv1_Contig14288:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921304 vs. ExPASy Swiss-Prot
Match: FBK77_ARATH (F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.569e-71
Identity = 134/219 (61.19%), Postives = 167/219 (76.26%), Query Frame = 3
Query:   69 MDGETSWINHCIDDMARGINEFDSFLELSDEGNKEASTLSVDLILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSN-VLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFIASSYGLVCFMDNDSRSELYVRNPISKSWKKLEEPPGLKFSDYSALSLS-------VDRVSHRYTVSIVKSKQVTGNFFSVGAFIHIY 701
            M+ ETSW N+    +   + E +S+ E SD+  K   T S+D +LPDDLLERIL++LPIASIFRAG VC+RW+EIVSSRRFL NFSN  +SQ+PWYFMFT++D+P GYAYDPI+RKWY  +LPCIETSNWF+ASS GLVCFMDND R+++YV NPI+K W+ L EPPG K +DY+A+S S       V+R +  Y+VSIVKSKQV GNFF     IH+Y
Sbjct:    1 MEAETSWTNYPYSYITY-VPEAESYREQSDDEAK-VETFSMDSLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTTDDPSGYAYDPIIRKWYSFDLPCIETSNWFVASSCGLVCFMDNDCRNKIYVSNPITKQWRTLIEPPGHKSTDYTAMSTSVNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLSIHLY 217          
BLAST of FC921304 vs. ExPASy Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 50/150 (33.33%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  204 PDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMFTSSDEPIGYAYDPILRKWYGIELPCIETSNWFI--ASSYGLVCFMDNDSRSELYVRNPISKSWKKLEEPPGLKFSDYS----ALSLSVDRVSHRYTV 635
            P DL E +++ LP+A+ F+   VCR+W+ ++ S  F   F+ +    PW++  T  +   G  YDP L+KW+   +P +   +  +  AS+ GLVCF+D   R+  YV NP++KS+++L   P   F  +S     ++L+ +  SH Y V
Sbjct:  121 PQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRN-FYVSNPLTKSFREL---PARSFKVWSRVAVGMTLNGNSTSHGYKV 266          
BLAST of FC921304 vs. ExPASy Swiss-Prot
Match: FK111_ARATH (F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 51/150 (34.00%), Postives = 72/150 (48.00%), Query Frame = 3
Query:  198 ILPDDLLERILAYLPIASIFRAGCVCRRWHEIVSSRRFLWNFSNVLSQKPWYFMF--TSSDEPIGYAYDPILRKWYGIELPCIET-SNWFIASSYGLVCFMDNDSRS-ELYVRNPISKSWKKLEEPPGLKFSDYSALSLSVDRVSHRYTV 635
            +LP+DLL  ILA +P   IFR   VC++W+ I+    FL   SNV S  P    F   S   P    +   L+ WY I    +   + W + SS GLVCF   D  +    V NP+ +SW+ L   P + ++    L + VDR    + V
Sbjct:  106 MLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLVCNPLMQSWRTL---PSMHYNQQRQLIMVVDRSDKSFKV 252          
The following BLAST results are available for this feature:
BLAST of FC921304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FBK77_ARATH2.569e-7161.19F-box/kelch-repeat protein At3g61590 OS=Arabidopsi... [more]
FBX6_ARATH2.136e-1733.33F-box only protein 6 OS=Arabidopsis thaliana GN=FB... [more]
FK111_ARATH7.110e-1334.00F-box/kelch-repeat protein At5g15710 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC32103D10EF RVDevelopN Citrus clementina cDNA clone C32103D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921304 ID=FC921304; Name=FC921304; organism=Citrus clementina; type=EST; length=717bp
GGAACAAAACAATATTATTATTATTATTGTTGTTGTTGTTATTTTTAAAT
AACTATCTCGTTTTGATTATGGATGGAGAAACATCTTGGATCAACCATTG
CATTGATGACATGGCAAGAGGCATTAATGAGTTTGATTCGTTCTTAGAGC
TTAGTGATGAAGGCAATAAAGAAGCTTCTACGCTTTCTGTTGACTTAATC
CTTCCTGATGACCTGTTGGAACGCATTCTAGCTTATCTCCCAATAGCTAG
CATATTTAGAGCAGGCTGCGTGTGCAGAAGATGGCATGAGATTGTCAGTT
CAAGAAGGTTTCTGTGGAACTTCTCAAATGTCCTATCACAAAAGCCCTGG
TATTTTATGTTTACAAGCTCTGATGAGCCAATTGGTTATGCTTATGATCC
CATCCTTCGAAAGTGGTATGGTATTGAACTCCCCTGCATTGAGACATCCA
ATTGGTTCATTGCTTCATCATATGGTTTGGTTTGCTTCATGGACAATGAC
AGTAGAAGTGAGTTATATGTCCGCAACCCTATCTCCAAAAGCTGGAAGAA
GCTTGAGGAACCACCAGGTTTGAAATTCTCTGATTACAGTGCGCTTTCAC
TCTCAGTGGACAGAGTATCACATCGCTATACTGTCTCAATTGTGAAGTCT
AAGCAAGTCACGGGGAATTTTTTTTCAGTGGGAGCTTTCATCCATATTTA
TGATCAGATACAATGAT
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