FC921317

Overview
NameFC921317
Unique NameFC921317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACOX4_ARATH (Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.274e-87
Identity = 154/202 (76.24%), Postives = 172/202 (85.15%), Query Frame = 2
Query:   89 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ 694
            M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQA+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AIA AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  GSDAS L TTATKVEGGW + GQ
Sbjct:    1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQ 202          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: GCDH_CAEEL (Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 52/145 (35.86%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  227 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT 661
            D +Q  D LT +E+++ +  RE  ++ + P + E +   +F   +IP++G++ + G   +GYGC G S  G  +   E+ RVD+   + + V +SL +  I   GSE+QKQKY+P LA    I C+ LTEP +GS+   + T AT
Sbjct:   24 DAFQLSDQLTEDERSLMLSAREYCQERLLPRVTEAYRTEKFDPSLIPEMGSMGLLGAPYQGYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASGKKIGCFGLTEPNHGSNPGGMETKAT 168          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  251 LTSEEQAVRMKVRECMEKEIAPIMVEYWEKA-EFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEG 691
            +T E+  +R  VR+   KEIAP   E  EK  EFPF +I K+G   + G  + + YG  G  V    +AI EI+R+ A+    + VH+S+    I   G+EEQK KY+P+LA  + +  +ALTEP  GSDA +L TTA K  G ++L G
Sbjct:    3 VTQEQVMMRKMVRDFARKEIAPA-AEIMEKTDEFPFQLIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLNG 150          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: GCDH_HUMAN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 54/139 (38.85%), Postives = 78/139 (56.12%), Query Frame = 2
Query:  242 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA 658
            ++ LT++E  +R   R   ++ + P ++       F   +I ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + C+ LTEP  GSD S++ T A
Sbjct:   57 EEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRA 195          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: GCDH_MACFA (Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  242 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA 658
            ++ LT++E  +R   R   ++ + P ++       F   +I ++G L V G TIKGYGC G S     +   E+ RVD+   + + V S L M  I   GSEEQ+QKYLP LA+   + C+ LTEP  GSD S++ T A
Sbjct:   57 EEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISQMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKGELLGCFGLTEPNSGSDPSSMETRA 195          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: GCDH_BOVIN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  242 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA 658
            ++ LT++E  +R   R   ++ + P ++       F   +I ++G L + G TI+GY C G S     +   E+ RVD+   + + V SSL M  I   GSEEQKQKYLP LA+   + C+ LTEP +GSD S + T A
Sbjct:   57 EEQLTADEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGMLGPTIQGYSCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGCFGLTEPNHGSDPSGMETRA 195          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: GCDH_MOUSE (Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  242 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA 658
            ++ LT++E+ +R   R   ++ +   ++       F   ++ ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEEQ+QKYLP LA+   + C+ LTEP +GSD   + T A
Sbjct:   57 EEQLTADEKLIRDTFRNYWQERLMSQILLANRNEVFHRDIVYEMGELGVLGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGGMETRA 195          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: GCDH_PIG (Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  242 DDLLTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE-QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA 658
            ++ LT++E  +R   R   ++ + P +V       F   +I ++G L V G TIKGYGC G S     +   E+ RVD+   + + V SSL M  I   GSEE Q+QKYLP LA+   + C+ LTEP +GSD  ++ T A
Sbjct:   26 EEQLTADEILIRDTFRTYCQEHLMPRIVLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRA 165          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  251 LTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEG 691
            LT E++ VR  VRE  E E+ PI  E  E   FP   + K+G   + G    K YG  G  V    IA+ E+++V  +    +  H+SL    I   G+EEQKQKYL  LA+   I  + LTEP  G+D+ A  T A      +++ G
Sbjct:    5 LTREQELVRQMVREFAENEVKPIAAEIDETERFPMENVKKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVLEGDHYVING 152          
BLAST of FC921317 vs. ExPASy Swiss-Prot
Match: ACDP_MYCLE (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae GN=fadE25 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 56/148 (37.84%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  251 LTSEEQAVRMKVRECMEKEIAPIMVEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEG 691
            L  E   +R  +R   EKEIAP   +  ++A FP   +  L A       + + YG  G     A I I E+ARVDAS S    V+  L  + + L GSEE K++ LPSLA    +A +AL+E   GSDA+++ T A      WIL G
Sbjct:   15 LPEEHNELRATIRALAEKEIAPHAADVDQRARFPEEALAALNASGFNAIHVPEEYGGQGADSVAACIVIEEVARVDASASLIPAVNK-LGTMGLILRGSEELKKQVLPSLAAEGAMASYALSEREAGSDAASMRTRAKADGDDWILNG 161          
The following BLAST results are available for this feature:
BLAST of FC921317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ACOX4_ARATH4.274e-8776.24Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidop... [more]
GCDH_CAEEL3.686e-2235.86Probable glutaryl-CoA dehydrogenase, mitochondrial... [more]
ACDB_BACSU3.120e-2141.61Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]
GCDH_HUMAN3.814e-1938.85Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo ... [more]
GCDH_MACFA1.893e-1838.13Glutaryl-CoA dehydrogenase, mitochondrial OS=Macac... [more]
GCDH_BOVIN1.893e-1837.41Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos t... [more]
GCDH_MOUSE2.472e-1836.69Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus m... [more]
GCDH_PIG7.193e-1838.57Glutaryl-CoA dehydrogenase, mitochondrial (Fragmen... [more]
ACDS_CLOAB4.662e-1736.49Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
ACDP_MYCLE2.558e-1537.84Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionC32103E12EF RVDevelopN Citrus clementina cDNA clone C32103E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921317 ID=FC921317; Name=FC921317; organism=Citrus clementina; type=EST; length=704bp
GACGTTTTTTTTTCAACGCTTAAGACTTCGCTTTAACGCGCTCTGAGTTT
CCTCCGTCACATCACACACACTGTTATCCGTAATCACCATGACTATTCAC
TCATCCAAACATCAAGATGATGTTGACAAAAATGCCAGGAGTTCGTATTT
TAATTTACCAGCATTGGATATTTCAGTCGCATTCCCTCAAGCAACACCGG
CGTCTAAGTTTCCTCCTTGTGCGTCAGACTACTATCAATTTGATGATCTC
TTGACTTCGGAGGAGCAGGCTGTTCGGATGAAAGTGAGAGAGTGTATGGA
GAAAGAAATAGCCCCTATAATGGTGGAGTATTGGGAGAAAGCAGAATTTC
CCTTTCATGTTATTCCAAAGCTTGGTGCCCTACGCGTAGCTGGTGGCACA
ATAAAGGGTTATGGCTGTCCTGGTCACTCTGTTACTGGAGCTGCTATTGC
TATAGCAGAAATTGCTCGAGTTGATGCTAGTTGTTCTACTTTTATATTGG
TGCATTCCTCTCTGGCGATGCTGACTATTGCATTGTGCGGGTCAGAGGAA
CAGAAGCAGAAATATCTACCTTCTTTGGCTCAGTTGAACACCATTGCCTG
TTGGGCTTTGACTGAACCTGCCTATGGGAGTGATGCAAGTGCTTTGAACA
CAACTGCTACTAAGGTGGAAGGAGGTTGGATACTTGAAGGTCAAAGCGCT
GGAT
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