FC921319

Overview
NameFC921319
Unique NameFC921319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14290 contig Ccv1_Contig14290:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921319 vs. ExPASy Swiss-Prot
Match: OTUBL_ARATH (Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.041e-72
Identity = 133/183 (72.68%), Postives = 155/183 (84.70%), Query Frame = 2
Query:   71 DDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILG 619
            ++W N      ++ Q   + EEA KVP+V DKEPLS+LA+EYQSGSPILLEKIK+L  QY  IRRTRGDGNCFFRSFMFSYLEHIL SQD+AEVDRIK  VE+CR+TLQ+LG+ DFTFEDFFALFLEQLD++LQG E SIS+ ELV RSRDQSVSDY+VMFFRFVT+G+IR R++FFEPFI G
Sbjct:   24 EEWGNCSS---VEDQPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQYIGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFEDFFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPFITG 203          
BLAST of FC921319 vs. ExPASy Swiss-Prot
Match: OTUB1_RAT (Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus GN=Otub1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 80/201 (39.80%), Postives = 117/201 (58.21%), Query Frame = 2
Query:   17 SERKKMQNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILG 619
            +E  + Q QE  G+  E  +   + DE IM QQ  I+ E A + P V+++  LS L  EY     I  +KIK L ++Y+ IR+TR DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L S G  +FT EDF   F++ ++ V    E   S  +L+    DQS SDY+V++ R +TSG +++ S+FFE FI G
Sbjct:    3 AEEPQQQKQEPLGSDSEGVNCLAY-DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196          
BLAST of FC921319 vs. ExPASy Swiss-Prot
Match: OTUB1_MOUSE (Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Otub1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 80/201 (39.80%), Postives = 117/201 (58.21%), Query Frame = 2
Query:   17 SERKKMQNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILG 619
            +E  + Q QE  G+  E  +   + DE IM QQ  I+ E A + P V+++  LS L  EY     I  +KIK L ++Y+ IR+TR DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L S G  +FT EDF   F++ ++ V    E   S  +L+    DQS SDY+V++ R +TSG +++ S+FFE FI G
Sbjct:    3 AEEPQQQKQEPLGSDSEGVNCLAY-DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196          
BLAST of FC921319 vs. ExPASy Swiss-Prot
Match: OTUB1_HUMAN (Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OTUB1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 80/201 (39.80%), Postives = 117/201 (58.21%), Query Frame = 2
Query:   17 SERKKMQNQEKCGASCEFDDWSNFEDEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILG 619
            +E  + Q QE  G+  E  +   + DE IM QQ  I+ E A + P V+++  LS L  EY     I  +KIK L ++Y+ IR+TR DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L S G  +FT EDF   F++ ++ V    E   S  +L+    DQS SDY+V++ R +TSG +++ S+FFE FI G
Sbjct:    3 AEEPQQQKQEPLGSDSEGVNCLAY-DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196          
BLAST of FC921319 vs. ExPASy Swiss-Prot
Match: OTUBL_DROME (Ubiquitin thioesterase otubain-like OS=Drosophila melanogaster GN=CG4968 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.205e-28
Identity = 71/178 (39.89%), Postives = 106/178 (59.55%), Query Frame = 2
Query:   92 DEDIMQQQSDIKAEEAQKVPFVADKEPLSALASEYQSGSPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNES--SISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFILG 619
            DE I+QQ+ DI+ E +   P V+++ PL+ L +EY SG  I   KI+ L ++Y  IRRTR DGNCFFR+F +SYLE++++  + +     K   EE +  L  LG   FT EDF   F+E +  V   N    S    EL     +Q  SDYVV++ R +TSG++++ ++F++ FI G
Sbjct:   12 DELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEY-SGDEIFTAKIQDLSKKYKFIRRTRPDGNCFFRAFAYSYLEYLIS--NTSAYQEFKKLAEESKEKLVQLGFPSFTLEDFHETFMEVIQRVSPDNAGGHSTVQDELHKIFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEG 186          
BLAST of FC921319 vs. ExPASy Swiss-Prot
Match: OTUBL_CAEEL (Ubiquitin thioesterase otubain-like OS=Caenorhabditis elegans GN=C25D7.8 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.093e-21
Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = 2
Query:   89 EDEDIMQQQSDIKAEEAQK-VPFVADKEPLSALASEYQSG-SPILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRS--RDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFI 613
            +DE ++Q Q     E+ QK VP VA   P S L +EY +  S   L K   L E Y  IR  RGDGNCF+R+ +   +E +L  +D+A +++  A   +  RTL  LG  D+T  DF   F+E L+ +  G      H E  V +   D   ++Y++MFFR +TS  +++ SE + PFI
Sbjct:   21 DDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIML--KDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSG-----VHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFI 192          
BLAST of FC921319 vs. ExPASy Swiss-Prot
Match: OTUB2_HUMAN (Ubiquitin thioesterase OTUB2 OS=Homo sapiens GN=OTUB2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = 2
Query:  212 ILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFI 613
            I   KI+ L +++ AIR+T+GDGNCF+R+  +SYLE +L      E+ + K +V +    L + G  +  F +FF  F   ++ V    E   S   L+    DQS SD++V F R +TS  IR R++FF  FI
Sbjct:   27 IYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGK--SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELV----EKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFI 154          
BLAST of FC921319 vs. ExPASy Swiss-Prot
Match: OTUB2_MOUSE (Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Otub2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.252e-16
Identity = 50/134 (37.31%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  212 ILLEKIKVLGEQYAAIRRTRGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRRTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRDQSVSDYVVMFFRFVTSGEIRKRSEFFEPFI 613
            I   KI+ L +++ +IR+T+GDGNCF+R+  +SYLE +L      E+ + K +V +    L + G  +  F +FF  F   ++  L   +SS+S   L+    DQS SD +V F R +TS  IR R++FF  FI
Sbjct:   27 IYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESLLGK--SREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVE--LVEKDSSVS--SLLKVFNDQSSSDRIVQFLRLLTSAFIRNRADFFRHFI 154          
The following BLAST results are available for this feature:
BLAST of FC921319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
OTUBL_ARATH1.041e-7272.68Ubiquitin thioesterase otubain-like OS=Arabidopsis... [more]
OTUB1_RAT7.549e-3139.80Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus ... [more]
OTUB1_MOUSE7.549e-3139.80Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Ot... [more]
OTUB1_HUMAN7.549e-3139.80Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OT... [more]
OTUBL_DROME1.205e-2839.89Ubiquitin thioesterase otubain-like OS=Drosophila ... [more]
OTUBL_CAEEL1.093e-2136.87Ubiquitin thioesterase otubain-like OS=Caenorhabdi... [more]
OTUB2_HUMAN8.103e-1737.31Ubiquitin thioesterase OTUB2 OS=Homo sapiens GN=OT... [more]
OTUB2_MOUSE5.252e-1637.31Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Ot... [more]
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Properties
Property NameValue
Genbank descriptionC32103F02EF RVDevelopN Citrus clementina cDNA clone C32103F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921319 ID=FC921319; Name=FC921319; organism=Citrus clementina; type=EST; length=621bp
GGGGAGACATCGGAATTCAGAAAGGAAGAAGATGCAAAATCAAGAGAAGT
GTGGAGCGTCATGTGAATTTGATGACTGGTCAAATTTCGAAGACGAGGAT
ATTATGCAGCAGCAATCCGATATTAAAGCCGAGGAAGCTCAAAAGGTTCC
ATTCGTTGCTGATAAGGAACCACTGTCTGCATTAGCATCTGAATATCAAT
CCGGCAGCCCAATTTTGTTGGAGAAAATTAAGGTTCTTGGTGAGCAGTAT
GCTGCCATTAGGCGTACACGAGGAGATGGGAACTGTTTTTTCCGAAGTTT
TATGTTCTCTTATCTTGAGCACATTTTGGCTTCTCAAGATCAAGCAGAAG
TAGATCGTATTAAAGCCAAGGTAGAAGAATGTAGAAGAACACTTCAGAGC
TTGGGTCACGCTGACTTTACCTTTGAAGACTTTTTTGCGTTATTTCTTGA
GCAGCTGGACAACGTTCTTCAAGGAAACGAATCTTCCATAAGTCACGGTG
AACTTGTAGTTAGAAGTAGAGATCAGTCAGTATCTGACTATGTTGTAATG
TTTTTCAGATTTGTTACATCTGGTGAAATAAGAAAGCGCTCAGAGTTTTT
TGAACCCTTTATATTGGGACT
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