FC921320

Overview
NameFC921320
Unique NameFC921320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14290 contig Ccv1_Contig14290:88..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921320 vs. ExPASy Swiss-Prot
Match: OTUBL_ARATH (Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 1.964e-68
Identity = 128/174 (73.56%), Postives = 146/174 (83.91%), Query Frame = 2
Query:   17 VQQQSDIKAEEAQKVPFVADNEPLSALASEYLSGSPILLEKIKVLGEQYAAIRRTPGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRTTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRHQSVSDYVVMFFRFVTSGEKT*RSDFFEPFILGLT 538
            V+ Q   + EEA KVP+V D EPLS+LA+EY SGSPILLEKIK+L  QY  IRRT GDGNCFFRSFMFSYLEHIL SQD+AEVDRIK  VE+CR TLQ+LG+ DFTFEDFFALFLEQLD++LQG E SIS+ ELV RSR QSVSDY+VMFFRFVT+G+   R+DFFEPFI GL+
Sbjct:   32 VEDQPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQYIGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFEDFFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPFITGLS 205          
BLAST of FC921320 vs. ExPASy Swiss-Prot
Match: OTUBL_DROME (Ubiquitin thioesterase otubain-like OS=Drosophila melanogaster GN=CG4968 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.393e-27
Identity = 71/178 (39.89%), Postives = 100/178 (56.18%), Query Frame = 2
Query:    5 DEDIVQQQSDIKAEEAQKVPFVADNEPLSALASEYLSGSPILLEKIKVLGEQYAAIRRTPGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRTTLQSLGHADFTFEDFFALFLEQLDNVLQGNES--SISHGELVVRSRHQSVSDYVVMFFRFVTSGEKT*RSDFFEPFILG 532
            DE I+QQ+ DI+ E +   P V++  PL+ L +EY SG  I   KI+ L ++Y  IRRT  DGNCFFR+F +SYLE++++  + +     K   EE +  L  LG   FT EDF   F+E +  V   N    S    EL      Q  SDYVV++ R +TSG+    +DF++ FI G
Sbjct:   12 DELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEY-SGDEIFTAKIQDLSKKYKFIRRTRPDGNCFFRAFAYSYLEYLIS--NTSAYQEFKKLAEESKEKLVQLGFPSFTLEDFHETFMEVIQRVSPDNAGGHSTVQDELHKIFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEG 186          
BLAST of FC921320 vs. ExPASy Swiss-Prot
Match: OTUB1_RAT (Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus GN=Otub1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.231e-26
Identity = 71/176 (40.34%), Postives = 99/176 (56.25%), Query Frame = 2
Query:    5 DEDIVQQQSDIKAEEAQKVPFVADNEPLSALASEYLSGSPILLEKIKVLGEQYAAIRRTPGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRTTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRHQSVSDYVVMFFRFVTSGEKT*RSDFFEPFILG 532
            DE I+ QQ  I+ E A + P V++   LS L  EY     I  +KIK L ++Y+ IR+T  DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L S G  +FT EDF   F++ ++ V    E   S  +L+     QS SDY+V++ R +TSG     S FFE FI G
Sbjct:   27 DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196          
BLAST of FC921320 vs. ExPASy Swiss-Prot
Match: OTUB1_MOUSE (Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Otub1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 9.231e-26
Identity = 71/176 (40.34%), Postives = 99/176 (56.25%), Query Frame = 2
Query:    5 DEDIVQQQSDIKAEEAQKVPFVADNEPLSALASEYLSGSPILLEKIKVLGEQYAAIRRTPGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRTTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRHQSVSDYVVMFFRFVTSGEKT*RSDFFEPFILG 532
            DE I+ QQ  I+ E A + P V++   LS L  EY     I  +KIK L ++Y+ IR+T  DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L S G  +FT EDF   F++ ++ V    E   S  +L+     QS SDY+V++ R +TSG     S FFE FI G
Sbjct:   27 DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196          
BLAST of FC921320 vs. ExPASy Swiss-Prot
Match: OTUB1_HUMAN (Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OTUB1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 9.231e-26
Identity = 71/176 (40.34%), Postives = 99/176 (56.25%), Query Frame = 2
Query:    5 DEDIVQQQSDIKAEEAQKVPFVADNEPLSALASEYLSGSPILLEKIKVLGEQYAAIRRTPGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRTTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRHQSVSDYVVMFFRFVTSGEKT*RSDFFEPFILG 532
            DE I+ QQ  I+ E A + P V++   LS L  EY     I  +KIK L ++Y+ IR+T  DGNCF+R+F FS+LE +L   D  E+ R KA   + +  L S G  +FT EDF   F++ ++ V    E   S  +L+     QS SDY+V++ R +TSG     S FFE FI G
Sbjct:   27 DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALL--DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQV----EKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196          
BLAST of FC921320 vs. ExPASy Swiss-Prot
Match: OTUBL_CAEEL (Ubiquitin thioesterase otubain-like OS=Caenorhabditis elegans GN=C25D7.8 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.061e-17
Identity = 61/179 (34.08%), Postives = 91/179 (50.84%), Query Frame = 2
Query:    5 DEDIVQQQSDIKA--EEAQKVPFVADNEPLSALASEYLSG-SPILLEKIKVLGEQYAAIRRTPGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRTTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRS--RHQSVSDYVVMFFRFVTSGEKT*RSDFFEPFI 526
            D++IV Q   +K   +E + VP VA   P S L +EY +  S   L K   L E Y  IR   GDGNCF+R+ +   +E +L  +D+A +++  A   +   TL  LG  D+T  DF   F+E L+ +  G      H E  V +       ++Y++MFFR +TS      S+ + PFI
Sbjct:   21 DDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIML--KDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSG-----VHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFI 192          
BLAST of FC921320 vs. ExPASy Swiss-Prot
Match: OTUB2_HUMAN (Ubiquitin thioesterase OTUB2 OS=Homo sapiens GN=OTUB2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 48/134 (35.82%), Postives = 71/134 (52.99%), Query Frame = 2
Query:  125 ILLEKIKVLGEQYAAIRRTPGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRTTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRHQSVSDYVVMFFRFVTSGEKT*RSDFFEPFI 526
            I   KI+ L +++ AIR+T GDGNCF+R+  +SYLE +L      E+ + K +V +    L + G  +  F +FF  F   ++ V    E   S   L+     QS SD++V F R +TS     R+DFF  FI
Sbjct:   27 IYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGK--SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELV----EKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFI 154          
BLAST of FC921320 vs. ExPASy Swiss-Prot
Match: OTUB2_MOUSE (Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Otub2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.806e-13
Identity = 48/134 (35.82%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  125 ILLEKIKVLGEQYAAIRRTPGDGNCFFRSFMFSYLEHILASQDQAEVDRIKAKVEECRTTLQSLGHADFTFEDFFALFLEQLDNVLQGNESSISHGELVVRSRHQSVSDYVVMFFRFVTSGEKT*RSDFFEPFI 526
            I   KI+ L +++ +IR+T GDGNCF+R+  +SYLE +L      E+ + K +V +    L + G  +  F +FF  F   ++  L   +SS+S   L+     QS SD +V F R +TS     R+DFF  FI
Sbjct:   27 IYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESLLGK--SREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVE--LVEKDSSVS--SLLKVFNDQSSSDRIVQFLRLLTSAFIRNRADFFRHFI 154          
The following BLAST results are available for this feature:
BLAST of FC921320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
OTUBL_ARATH1.964e-6873.56Ubiquitin thioesterase otubain-like OS=Arabidopsis... [more]
OTUBL_DROME6.393e-2739.89Ubiquitin thioesterase otubain-like OS=Drosophila ... [more]
OTUB1_RAT9.231e-2640.34Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus ... [more]
OTUB1_MOUSE9.231e-2640.34Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Ot... [more]
OTUB1_HUMAN9.231e-2640.34Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OT... [more]
OTUBL_CAEEL2.061e-1734.08Ubiquitin thioesterase otubain-like OS=Caenorhabdi... [more]
OTUB2_HUMAN2.786e-1435.82Ubiquitin thioesterase OTUB2 OS=Homo sapiens GN=OT... [more]
OTUB2_MOUSE1.806e-1335.82Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Ot... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32103F03EF RVDevelopN Citrus clementina cDNA clone C32103F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921320 ID=FC921320; Name=FC921320; organism=Citrus clementina; type=EST; length=539bp
CNAAGACGAGGATATTGTGCAGCAGCAATCCGATATTAAAGCCGAGGAAG
CTCAAAAGGTTCCATTCGTTGCTGATAACGAACCACTGTCTGCATTAGCA
TCTGAATATCTATCCGGCAGCCCAATTTTGTTGGAGAAAATTAAGGTTCT
TGGTGAGCAGTATGCTGCCATTAGGCGTACACCAGGAGATGGGAACTGTT
TTTTCCGAAGTTTTATGTTCTCTTATCTTGAGCACATTTTGGCTTCTCAA
GATCAAGCAGAAGTAGATCGTATTAAAGCCAAGGTAGAAGAATGTAGAAC
AACACTTCAGAGCTTGGGTCACGCTGACTTTACCTTTGAAGACTTTTTTG
CGTTATTTCTTGAGCAGCTGGACAACGTTCTTCAAGGAAACGAATCTTCC
ATAAGTCACGGTGAACTTGTAGTTAGAAGTAGACATCAGTCAGTATCTGA
CTATGTTGTAATGTTTTTCAGATTTGTTACATCTGGTGAAAAAACATAGC
GCTCAGATTTTTTTGAACCCTTTATATTGGGACTAACAA
back to top