FC921405

Overview
NameFC921405
Unique NameFC921405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: IMPL1_ARATH (Phosphatase IMPL1, chloroplastic OS=Arabidopsis thaliana GN=IMPL1 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.030e-71
Identity = 145/219 (66.21%), Postives = 166/219 (75.80%), Query Frame = 1
Query:   88 MGRSLVSFTNVPLRFSQVP-RSFPAPNHSTQCQVPRHNANSFSGYQKARVLTAKPRRT--FCTKAVLSEIP----YQKVGAKSTGPIPTSQPIQVVESAAKTGAEVVMDAVNKPRNITYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQRNPAAASVVEFVGGPMCWKYSTFSA 723
            MGRSL+   N+ LR S +P  S P  N      +     N    Y+  R+L+   + T    TKAVLSE+     Y ++GAK+TG I  +  ++VVE AAKTGAEVVM+AVNKPRNITYKGL+DLVTDTDKASEAA+LEVVKKNF DHLILGEEGG+IGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVL++ NPAAASVVEFVGGPMCW   TFSA
Sbjct:    1 MGRSLIFSGNMSLRISHLPGSSLPLQN-----PISGRTVNRTFRYRCTRILSNSFKSTTRLQTKAVLSEVSDQTRYPRIGAKTTGTISPAHLLEVVELAAKTGAEVVMEAVNKPRNITYKGLSDLVTDTDKASEAAILEVVKKNFSDHLILGEEGGIIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGNPAAASVVEFVGGPMCWNTRTFSA 214          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: SUHB_SYNY3 (Inositol-1-monophosphatase OS=Synechocystis sp. (strain PCC 6803) GN=suhB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  355 ESAAKTGAEVVMDAVNKPRNITYKGLT-DLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQRNPAAASV 672
            E+    GAE+      K + I  KG   DLVT+ D+ +EA +LE++K+   DH IL EE G +G   + + W IDPLDGTTNFAH YP   VS+G+L Q  P    V
Sbjct:   23 EAVLAAGAEI-FSLWGKVQQIQEKGRAGDLVTEADRQAEAIILEIIKRRCPDHAILAEESGQLGQVDNPFCWAIDPLDGTTNFAHSYPVSCVSIGLLIQDIPTVGVV 128          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: SUHB_VIBCH (Inositol-1-monophosphatase OS=Vibrio cholerae GN=VC_0745 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  352 VESAAKTGAEVVMDAVNKPR-NITYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQRNPAAASVVE 678
            + +A K G  +     N  +   T KG  D VT+ DK +EA ++  +K ++ +H I+ EEGG+I     +  W IDPLDGTTNF  G+P FAVS+ V F+     A V +
Sbjct:    9 IRAARKAGNHIAKSLENAEKIQTTQKGSNDFVTNVDKEAEAIIVSTIKSSYPEHCIIAEEGGLIEGKDKEVQWIIDPLDGTTNFVKGFPHFAVSIAVRFRGKTEVACVYD 118          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: SUHB_AQUAE (Inositol-1-monophosphatase OS=Aquifex aeolicus GN=suhB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  343 IQVVESAAKTGAEVVMDAVNKPR--NITYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQRNPAAASV 672
            ++V + AA  G +V+ +   K +  NI  KG  D V+  DK SE  + EV+ K F DH ++GEE G  G S S+Y W IDPLDGT N+ +G+P FAVSVG++    P   +V
Sbjct:    8 LEVAKIAALAGGQVLKENFGKVKKENIEEKGEKDFVSYVDKTSEERIKEVILKFFPDHEVVGEEMGAEG-SGSEYRWFIDPLDGTKNYINGFPIFAVSVGLVKGEEPIVGAV 118          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: IMP3_SOLLC (Inositol monophosphatase 3 OS=Solanum lycopersicum GN=IMP3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  337 QPIQVVESAAKTGAEVVMDAVNKPRNITYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVI---GDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQRNPAAASV 672
            Q + V   AAK   E++ +   K +++ +KG+ DLVT+TDKA E  +   +K+ F  H  +GEE        + + +  W +DPLDGTTNF HG+P   VS+G+  ++ P    V
Sbjct:    9 QFLDVAVEAAKKAGEIIREGFYKTKHVEHKGMVDLVTETDKACEDFIFNHLKQRFPSHKFIGEETTAACGNFELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIEKKPTVGVV 123          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: IMP2_SOLLC (Inositol monophosphatase 2 OS=Solanum lycopersicum GN=IMP2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.415e-17
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  343 IQVVESAAKTGAEVVMDAVNKPRNITYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIG----DSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQRNPAAASV 672
            + V   AAK   E++     K ++I +KG+ DLVT+TDKA E  +   +K+ F  H  +GEE         + + +  W +DPLDGTTNF HG+P   VS+G+  ++ P    V
Sbjct:    5 VDVAIEAAKKAGEIIRHGFYKSKHIEHKGVVDLVTETDKACEVLIFNHLKQCFPSHKFIGEETTAAASGNFELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIEKKPVVGVV 118          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: IMP1_SOLLC (Inositol monophosphatase 1 OS=Solanum lycopersicum GN=IMP1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  349 VVESAAKTGAEVVMDAVNKPRNITYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIG---DSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQRNPAAASVVE 678
            V   AAK   E++    ++ +++ +KG  DLVT+TDKA E  +   +K++F  H  +GEE        D + +  W +DP+DGTTNF HG+PS  VS+G+   + P    V +
Sbjct:   13 VAVDAAKRAGEIIRKGFHETKHVVHKGQVDLVTETDKACEDLIFNHLKQHFPSHKFIGEETSAATGDFDLTDEPTWIVDPVDGTTNFVHGFPSVCVSIGLTIGKIPTVGVVYD 125          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: SUHB_HAEIN (Inositol-1-monophosphatase OS=Haemophilus influenzae GN=suhB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  418 TYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGV 639
            T KG+ D VT+ DKASEA ++EV++K++ DH I+ EE G I    SD  W IDPLDGT NF  G P F+VS+ V
Sbjct:   32 TQKGINDYVTNVDKASEAEIIEVIRKSYPDHTIITEETGAIEGKDSDVQWIIDPLDGTRNFMTGLPHFSVSIAV 105          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: SUHB_PASMU (Inositol-1-monophosphatase OS=Pasteurella multocida GN=suhB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  343 IQVVESAAKTGAEVVMDAVNKPRNI--TYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGV 639
            + +   AA+    V+     +  ++  T K   D VT+ DKASE A++EV++K++ DH I+ EE G +    SD  W IDPLDGTTNF  G P F+VS+ +
Sbjct:    5 LNIAIRAARKAGNVIAKGYERRDDLQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEESGALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAI 105          
BLAST of FC921405 vs. ExPASy Swiss-Prot
Match: SUHB_PSEAE (Inositol-1-monophosphatase OS=Pseudomonas aeruginosa GN=suhB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 1
Query:  343 IQVVESAAKTGAEVVMDAVNKPR--NITYKGLTDLVTDTDKASEAAVLEVVKKNFVDHLILGEEGGVIGDSS--SDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFQRNPAAASVVE 678
            + +   AA++  E++  ++ +    ++  K   D VT+ D+A+E  ++  ++K +  H I+GEEGG I  S   +DYLW IDPLDGTTNF HG P FAVS+   ++     A V++
Sbjct:    5 LNIALRAARSAGELIFRSIERLDVISVNEKDAKDYVTEVDRAAEQTIVAALRKAYPTHAIMGEEGGFIEGSGEGADYLWVIDPLDGTTNFIHGVPHFAVSIACKYKGRLEHAVVLD 120          
The following BLAST results are available for this feature:
BLAST of FC921405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
IMPL1_ARATH2.030e-7166.21Phosphatase IMPL1, chloroplastic OS=Arabidopsis th... [more]
SUHB_SYNY32.604e-1844.86Inositol-1-monophosphatase OS=Synechocystis sp. (s... [more]
SUHB_VIBCH1.688e-1739.09Inositol-1-monophosphatase OS=Vibrio cholerae GN=V... [more]
SUHB_AQUAE3.761e-1743.75Inositol-1-monophosphatase OS=Aquifex aeolicus GN=... [more]
IMP3_SOLLC3.761e-1736.52Inositol monophosphatase 3 OS=Solanum lycopersicum... [more]
IMP2_SOLLC6.415e-1736.84Inositol monophosphatase 2 OS=Solanum lycopersicum... [more]
IMP1_SOLLC1.094e-1636.28Inositol monophosphatase 1 OS=Solanum lycopersicum... [more]
SUHB_HAEIN1.429e-1654.05Inositol-1-monophosphatase OS=Haemophilus influenz... [more]
SUHB_PASMU1.866e-1640.59Inositol-1-monophosphatase OS=Pasteurella multocid... [more]
SUHB_PSEAE4.158e-1637.07Inositol-1-monophosphatase OS=Pseudomonas aerugino... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32104F02EF RVDevelopN Citrus clementina cDNA clone C32104F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921405 ID=FC921405; Name=FC921405; organism=Citrus clementina; type=EST; length=726bp
GGGATGCTGGCAAGTTTTAAGGATTTTGGAACACAAAGCAGCAAGGACAC
GAACACGAACACGAACGCGAAGCCAGAATAACAGAAAATGGGGAGGTCTC
TAGTTTCCTTCACAAACGTTCCTCTGAGATTTTCTCAAGTGCCCAGATCA
TTTCCCGCACCTAATCACTCAACCCAGTGCCAAGTTCCGAGACATAACGC
CAACTCCTTCTCTGGGTATCAAAAAGCTCGAGTTTTAACCGCGAAACCGA
GGAGGACATTTTGTACGAAGGCCGTGCTTTCTGAGATTCCGTACCAAAAA
GTGGGTGCCAAATCAACTGGACCTATTCCTACTAGTCAGCCCATTCAAGT
TGTTGAGAGTGCTGCTAAAACTGGCGCTGAGGTTGTGATGGATGCTGTTA
ATAAGCCTCGTAATATAACATACAAAGGACTTACTGACTTAGTGACCGAC
ACAGATAAAGCTAGTGAGGCTGCTGTACTAGAAGTTGTAAAAAAGAATTT
TGTGGACCATCTCATTCTTGGAGAGGAGGGCGGAGTTATAGGAGATTCAT
CATCTGATTATTTATGGTGTATTGATCCTTTAGATGGAACAACAAATTTT
GCACACGGTTATCCTAGTTTTGCAGTTTCTGTGGGAGTTTTATTTCAAAG
GAACCCTGCTGCTGCTTCTGTGGTAGAGTTTGTTGGCGGCCCTATGTGTT
GGAAATACTCGACATTTTCTGCACTG
back to top