FC921412

Overview
NameFC921412
Unique NameFC921412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: KASC1_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=2 SV=2)

HSP 1 Score: 440.269 bits (1131), Expect = 4.594e-123
Identity = 215/227 (94.71%), Postives = 223/227 (98.24%), Query Frame = 2
Query:    5 LIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            LIEKGHR+I+PFFIPYAITNMGSALLAIDLG MGPNYSISTACATSNYCFYAAANHIRRGEAD+M+AGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDK RDGFVMGEGAGVLVMESLEHAMKRGAPI+AEYLGGAVNCDA+HMTDPRADGLGVSSCIE  LEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFK+T+GIKINATKSMIGHCLGAAGGL
Sbjct:  182 LIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNYCFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDGFVMGEGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADGLGVSSCIERCLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKSTSGIKINATKSMIGHCLGAAGGL 408          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: KASC1_HORVU (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 1.295e-117
Identity = 206/227 (90.75%), Postives = 218/227 (96.04%), Query Frame = 2
Query:    5 LIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTTGIKINATKSMIGHCLGAAGGL 685
            LIEKG+RKI+PFFIPYAITNMGSALLAID+GFMGPNYSISTACATSNYCFYAAANHIRRGEAD+++AGGTEAAIIPIGLGGFVACRALSQRNDDP TA RPWDK+RDGFVMGEGAGVLVMESLEHAMKR APIIAEYLGGAVNCDAYHMTDPRADGLGVSSCI  SL DAGV+PEEVNYINAHATSTLAGDLAE+ AIK+VFKN + IKIN+TKSMIGHCLGAAGGL
Sbjct:  171 LIEKGYRKISPFFIPYAITNMGSALLAIDVGFMGPNYSISTACATSNYCFYAAANHIRRGEADIIVAGGTEAAIIPIGLGGFVACRALSQRNDDPITACRPWDKERDGFVMGEGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCITMSLRDAGVAPEEVNYINAHATSTLAGDLAEVRAIKQVFKNPSEIKINSTKSMIGHCLGAAGGL 397          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABF_VIBCH (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae GN=fabF PE=3 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 7.454e-65
Identity = 123/230 (53.48%), Postives = 161/230 (70.00%), Query Frame = 2
Query:    2 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF--KNTTGIKINATKSMIGHCLGAAGGL 685
            ALIEKG RK++PFF+P  I NM +  L+I  G  GPN +ISTAC T  +    AA  I  G+AD M+AGG E A  P+G+ GF A +ALS RND+PQ ASRPWDKDRDGFV+G+GAG++V+E  EHA  RGA I AE +G  ++ DAYHMT P  DG G +  +E+++ DAGV+ E++ Y+NAH TST AGD+AE+  IK+      T  + +++TKSM GH LGAAG +
Sbjct:  121 ALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGIMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVLVSSTKSMTGHLLGAAGSV 350          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABF_COXBU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii GN=fabF PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.169e-64
Identity = 126/229 (55.02%), Postives = 158/229 (69.00%), Query Frame = 2
Query:    2 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGL 685
            AL+  G RKI+PFFIP AI NM S +++I     GPN SI TAC T  +    AA  I   +AD M+AGGTE A  P+G+GGF A RALS RND+P+ ASRPWDK RDGFV+GEGA  +V+E LEHA KR A I AE +G  ++ DAYHMT P  +  G ++C+++SL DAG++PE V+YINAH TST A D  E  AIKK F  +   + +++TKSM GH LGAAG L
Sbjct:  121 ALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARMIAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAACVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAEGFTTCMKNSLRDAGIAPERVDYINAHGTSTPAADPLEARAIKKTFGDHAYKLAVSSTKSMTGHMLGAAGAL 349          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABF_VIBHA (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 118/230 (51.30%), Postives = 159/230 (69.13%), Query Frame = 2
Query:    2 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF--KNTTGIKINATKSMIGHCLGAAGGL 685
            AL+EKG RK++PFF+P  I NM +  L+I  G  GPN +ISTAC T  +    AA  I  G+A+ M+AGG E A  P+G+ GF A +ALS RND+PQ ASRPWDK RDGFV+G+GAGV+V+E  EHA  RGA I AE +G  ++ DAYHMT P  DG G +  +E+++ DA ++  +V Y+NAH TST AGD+AEI  +K+    + +  + +++TKSM GH LGAAG +
Sbjct:  121 ALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKGRDGFVLGDGAGVMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDANITGTQVGYVNAHGTSTPAGDVAEIKGVKRALGEEGSKQVLVSSTKSMTGHLLGAAGSV 350          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABF_SHIFL (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shigella flexneri GN=fabF PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 118/229 (51.53%), Postives = 159/229 (69.43%), Query Frame = 2
Query:    2 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGL 685
            +L+  G RKI+PFF+P  I NM +  L I  G  GP+ SI+TAC +  +    AA  I  G+AD+M+AGG E A  P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+LV+E  EHA KRGA I AE +G  ++ DAYHMT P  +G G +  + ++L DAG+   ++ Y+NAH TST AGD AE  A+K +F +  + + +++TKSM GH LGAAG +
Sbjct:  121 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAV 349          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABF_ECOLI (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli (strain K12) GN=fabF PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 118/229 (51.53%), Postives = 159/229 (69.43%), Query Frame = 2
Query:    2 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGL 685
            +L+  G RKI+PFF+P  I NM +  L I  G  GP+ SI+TAC +  +    AA  I  G+AD+M+AGG E A  P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+LV+E  EHA KRGA I AE +G  ++ DAYHMT P  +G G +  + ++L DAG+   ++ Y+NAH TST AGD AE  A+K +F +  + + +++TKSM GH LGAAG +
Sbjct:  121 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAV 349          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABF_ECOL6 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O6 GN=fabF PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 118/229 (51.53%), Postives = 159/229 (69.43%), Query Frame = 2
Query:    2 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGL 685
            +L+  G RKI+PFF+P  I NM +  L I  G  GP+ SI+TAC +  +    AA  I  G+AD+M+AGG E A  P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+LV+E  EHA KRGA I AE +G  ++ DAYHMT P  +G G +  + ++L DAG+   ++ Y+NAH TST AGD AE  A+K +F +  + + +++TKSM GH LGAAG +
Sbjct:  121 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAV 349          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABF_ECO57 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O157:H7 GN=fabF PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 118/229 (51.53%), Postives = 159/229 (69.43%), Query Frame = 2
Query:    2 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVF-KNTTGIKINATKSMIGHCLGAAGGL 685
            +L+  G RKI+PFF+P  I NM +  L I  G  GP+ SI+TAC +  +    AA  I  G+AD+M+AGG E A  P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+LV+E  EHA KRGA I AE +G  ++ DAYHMT P  +G G +  + ++L DAG+   ++ Y+NAH TST AGD AE  A+K +F +  + + +++TKSM GH LGAAG +
Sbjct:  121 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAV 349          
BLAST of FC921412 vs. ExPASy Swiss-Prot
Match: FABF_SYNY3 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=fabF PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.220e-60
Identity = 118/228 (51.75%), Postives = 151/228 (66.23%), Query Frame = 2
Query:    5 LIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKN-TTGIKINATKSMIGHCLGAAGGL 685
            L++KG  + +PF IP  I NM S L AI+LG  GPN    TACA  +     A   ++ G A  M+ GGTEAAI P+   GF + RALS RNDDP  ASRP+DKDRDGFVMGEG+G+L++E LE A+ RGA I  E +G A+ CDAYH+T P  DG G +  I  +L+D+G+ PE V+YINAH TST A D+ E  AIK+   N    I +++TKSM GH LG +GG+
Sbjct:  125 LLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGI 352          
The following BLAST results are available for this feature:
BLAST of FC921412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
KASC1_ARATH4.594e-12394.713-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
KASC1_HORVU1.295e-11790.753-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
FABF_VIBCH7.454e-6553.483-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_COXBU2.169e-6455.023-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Cox... [more]
FABF_VIBHA4.522e-6251.303-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_SHIFL4.522e-6251.533-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shi... [more]
FABF_ECOLI4.522e-6251.533-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECOL64.522e-6251.533-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECO574.522e-6251.533-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_SYNY37.220e-6051.753-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionC32104F10EF RVDevelopN Citrus clementina cDNA clone C32104F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921412 ID=FC921412; Name=FC921412; organism=Citrus clementina; type=EST; length=686bp
GGCTCTAATAGAAAAAGGTCATAGAAAAATAACCCCGTTCTTCATTCCGT
ATGCTATAACAAACATGGGTTCTGCTTTGCTTGCAATTGACCTTGGCTTC
ATGGGTCCAAATTATTCAATTTCAACTGCCTGTGCAACCTCCAATTATTG
CTTTTATGCTGCCGCCAATCACATCCGTCGAGGAGAGGCTGATTTGATGC
TTGCTGGTGGAACTGAAGCAGCCATTATTCCTATTGGATTGGGTGGTTTT
GTTGCATGTAGAGCATTGTCTCAGAGAAATGATGACCCACAAACTGCTTC
TAGGCCATGGGACAAAGATCGGGATGGCTTTGTCATGGGAGAAGGTGCTG
GAGTATTGGTGATGGAGAGCTTGGAACATGCAATGAAACGAGGTGCACCG
ATCATAGCAGAGTACTTAGGGGGTGCTGTTAATTGTGATGCTTATCATAT
GACTGACCCCAGAGCTGATGGACTTGGAGTGTCTTCATGCATTGAGAGCA
GCCTTGAAGATGCTGGTGTGTCACCTGAGGAGGTCAACTACATAAATGCT
CACGCAACTTCCACTTTAGCTGGTGACCTGGCTGAGATAAATGCTATTAA
AAAGGTGTTCAAGAACACCACAGGGATCAAAATCAATGCCACGAAGTCTA
TGATAGGGCACTGCCTTGGTGCAGCTGGNGGTTTGG
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