FC921458

Overview
NameFC921458
Unique NameFC921458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10289 contig Ccv1_Contig10289:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921458 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.556e-77
Identity = 138/213 (64.79%), Postives = 174/213 (81.69%), Query Frame = 1
Query:   82 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWRERISSKNPRVESCRSILDNLVASLDLSKVKNSAKGKVLMRAMYGVKGVTVFVCSIFAAA 720
            M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE  LA  + KL+PK+K DIL +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+++QGHLLLQ  LH L+++SP    +A SSLD+W++ I SKNPR+E+CR+IL +LV +L+L KVKNSAKGKVLMRA+YGVK  T+++  +FAAA
Sbjct:    1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKVKNSAKGKVLMRALYGVKVKTLYISGVFAAA 213          
BLAST of FC921458 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.310e-61
Identity = 123/216 (56.94%), Postives = 148/216 (68.52%), Query Frame = 1
Query:   82 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWRERISSKNPRVESCRSILDNLVASLDLSKVKNSAKGKVLMRAMYGVKGVTVFVCSIFAA 717
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  + PR+ SC + L  L  +L L KVKNS KGKVLMRA+YG++ VTVFVCSIF A
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAGNLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVA 216          
BLAST of FC921458 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.254e-60
Identity = 123/216 (56.94%), Postives = 148/216 (68.52%), Query Frame = 1
Query:   82 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWRERISSKNPRVESCRSILDNLVASLDLSKVKNSAKGKVLMRAMYGVKGVTVFVCSIFAA 717
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  +  R+ SC + L  L  +L L KVKNSAKGKVLMRA+YG++ VTVFVCSIF A
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVA 216          
The following BLAST results are available for this feature:
BLAST of FC921458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH9.556e-7764.79Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSI4.310e-6156.94UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
U496D_ORYSJ1.254e-6056.94UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionC32105B11EF RVDevelopN Citrus clementina cDNA clone C32105B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921458 ID=FC921458; Name=FC921458; organism=Citrus clementina; type=EST; length=733bp
CTCGCCGGGGGCAATAGTGTCTCTAACGCGTCTGCGAAATTTCCTAAGAT
TTTCGAGTACTGATTTCGCAAATCCATCAAAATGAGTCGCCCCCAGGATC
CACACCGTCCTTTCTTCCCATTTGGAAATCCTTTTCGGATGATGTCCCCC
AAAGGTTCTCGTTTGTCTCCCAAGCTTGTATCTCTGTTGGCTGATTTTGA
GGAGACCTTGGCAGAGAGGCTGAGAAAACTTATGCCGAAAGACAAGGATG
ATATCCTCAACTTATCATGGATGAGACTGGCAATGGAGTCACTTTGTGAG
ACTCACAATGTCATAAAAGACCTTATAACTGAGTTGGAGCTTCCTGTAAG
TGACTGGGATGAGAAATGGATAGACGTGTACTTAGACATCAGTGTAAACT
TGCTTGATATATGCATTGCTTTTAGCTCTGTTCTCACGAAGGTCAGCCAA
GGCCACCTATTGCTTCAGTGTGTCTTGCACACTTTGGATTCTTCCTCTCC
AACACAGTTTGGGCGAGCCTGTTCTTCTCTTGATAACTGGAGGGAGCGCA
TTAGTTCAAAGAACCCCAGAGTTGAGAGCTGTCGTTCAATCTTAGACAAT
CTGGTAGCTTCTTTGGATTTGTCCAAGGTTAAGAACTCAGCCAAAGGGAA
GGTTTTGATGCGCGCAATGTATGGNGTTAAAGGTGTGACTGTATTTGTTT
GTAGTATTTTTGCTGCAGCCTCTCTGGATCAGC
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