FC921466

Overview
NameFC921466
Unique NameFC921466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184C_PONAB (Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  315 YPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEVCL 584
            + Y+ ++ N SQ +A+YCL+ FY V K+EL+ I+P+ KFL  K +VF+++WQ V IALL  +G+         Q   +V    QDFIICIE+ L
Sbjct:  210 WTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFL 303          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184C_BOVIN (Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  315 YPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEVCL 584
            + Y+ ++ N SQ +A+YCL+ FY V K+EL+ I+P+ KFL  K +VF+++WQ V IALL  +G+         Q   +V    QDFIICIE+ L
Sbjct:  210 WTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFL 303          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184C_MOUSE (Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  315 YPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEV 578
            + Y+ ++ N SQ +A+YCL+ FY V K+EL+ I+P+ KFL  K +VF+++WQ V IALL  LG+         Q   +V    QDFIICIE+
Sbjct:  210 WTYLVILNNLSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVLIALLVKLGVISEKRTWEWQSAEAVATGLQDFIICIEM 301          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184C_HUMAN (Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  315 YPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEVCL 584
            + Y+ ++ N SQ +A+YCL+ FY V K+EL+ I+P+ KFL  + +VF+++WQ V IALL  +G+         Q   +V    QDFIICIE+ L
Sbjct:  210 WTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVRLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEAVATGLQDFIICIEMFL 303          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184C_RAT (Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  315 YPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEV 578
            + Y+ ++ N SQ +A+YCL+ FY V K+EL+ I+P+ KFL  K +VF+++WQ V IALL  +G+         Q   +V    QDFIICIE+
Sbjct:  210 WTYLVILNNLSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSFWQAVLIALLVKVGVISEKRTWEWQSAEAVATGLQDFIICIEM 301          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184C_CHICK (Transmembrane protein 184C OS=Gallus gallus GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 47/157 (29.94%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  165 LREFCCLKNRCLFELVVLTVNFSRSETVGSYQWNLIKKSLILCAFLCFC-------------RYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEVCL 584
            L   CC  +  + E+++          +G  Q+ +++    + A +C                + Y+ ++ N SQ +A+YCL+ FY V ++EL  I+P+ KFL  K +VF+++WQ V IALL  +G+         Q   +V    QDFIIC+E+ L
Sbjct:  151 LPPLCCCPSWAMGEVLLFRCK------LGVLQYTVVRPFTTIIALICELVGVYDEGNFSFDNAWTYLVILNNMSQLFAMYCLVLFYKVLREELNPIQPVGKFLCVKMVVFVSFWQAVLIALLVKVGVISEKHTWEWQSVEAVATGLQDFIICVEMFL 301          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184C_XENTR (Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  315 YPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKS--------PIAQGLQFKSSVQDFIICIEVCLPSSSNIF 605
            + Y+ ++ N SQ +A+YCL+ FY V K+EL  I+P+ KFL  K +VF+++WQ V IA+L   G+  +         +A GL      QDFIIC+E+ L + ++ F
Sbjct:  208 WTYLVIINNVSQVFAMYCLVLFYKVLKEELNPIQPVGKFLCVKMVVFVSFWQAVFIAILVKAGVISNTWEWKKVQDVATGL------QDFIICVEMFLAAVAHHF 306          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184C_XENLA (Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  315 YPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKS--------PIAQGLQFKSSVQDFIICIEVCL 584
            + Y+ ++ N SQ +A+YCL+ FY V K+EL  I+P+ KFL  K +VF+++WQ V IA+L   G+  +         +A GL      QDFIIC+E+ L
Sbjct:  208 WTYLVIINNVSQVFAMYCLVLFYKVLKEELNPIQPVGKFLCVKMVVFVSFWQAVFIAILVKAGVISNTWEWKRVQDVATGL------QDFIICVEMFL 299          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 47/156 (30.13%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  180 CLKNRCLFELVVLTVNFSRSETVGSYQWNLIKK-----SLILCAFLCF--------CRYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQ------FKSSVQDFIICIEVCLPS 590
            CL   C    +  ++ F R     + Q+ L+K      ++IL AF  +          Y Y+ ++ N S S ALY L  FY  T++ L   +P+ KFLT K+++FL++WQG+ +A+L   G+       G          +  Q+FIIC+E+   S
Sbjct:  162 CLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYLYVTLIYNASVSLALYALFLFYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGAGTLAAGYQNFIICVEMLFAS 317          
BLAST of FC921466 vs. ExPASy Swiss-Prot
Match: T184A_BOVIN (Transmembrane protein 184A OS=Bos taurus GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 47/157 (29.94%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  180 CLKNRCLFELVVLTVNFSRSETVGSYQWNLIKK-----SLILCAFLCF--------CRYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFK-------SPIAQGLQFKSSVQDFIICIEVCLPS 590
            C    C    +  ++ F R     + Q+ ++K      +++L AF  +          Y Y+ +V N S S ALY L  FY+ T++ L   +P+ KFLT K+++FL++WQG+ +A+L   G+         S +  G    +  Q+FIICIE+   S
Sbjct:  152 CFHGTCCLRGMTYSIGFLRFCKQATLQFCIVKPIMALVTIVLQAFGKYHDGDFNVRSGYLYITLVYNASVSLALYALFLFYSATRELLQPFEPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVQVIDGSTVGAG-TVAAGYQNFIICIEMLFAS 307          
The following BLAST results are available for this feature:
BLAST of FC921466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
T184C_PONAB7.382e-1543.62Transmembrane protein 184C OS=Pongo abelii GN=TMEM... [more]
T184C_BOVIN7.382e-1543.62Transmembrane protein 184C OS=Bos taurus GN=TMEM18... [more]
T184C_MOUSE9.642e-1544.57Transmembrane protein 184C OS=Mus musculus GN=Tmem... [more]
T184C_HUMAN1.645e-1442.55Transmembrane protein 184C OS=Homo sapiens GN=TMEM... [more]
T184C_RAT2.148e-1443.48Transmembrane protein 184C OS=Rattus norvegicus GN... [more]
T184C_CHICK3.664e-1429.94Transmembrane protein 184C OS=Gallus gallus GN=TME... [more]
T184C_XENTR4.785e-1439.05Transmembrane protein 184C OS=Xenopus tropicalis G... [more]
T184C_XENLA1.066e-1340.82Transmembrane protein 184C OS=Xenopus laevis GN=tm... [more]
T184A_HUMAN5.849e-1230.13Transmembrane protein 184A OS=Homo sapiens GN=TMEM... [more]
T184A_BOVIN9.977e-1229.94Transmembrane protein 184A OS=Bos taurus GN=TMEM18... [more]

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Properties
Property NameValue
Genbank descriptionC32105C07EF RVDevelopN Citrus clementina cDNA clone C32105C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921466 ID=FC921466; Name=FC921466; organism=Citrus clementina; type=EST; length=701bp
AGCACGCAGCTGGGTTGAATGGTTTGAATCTTGTTTTAGGTCTATCAGTC
TCTTCGTGGGTGTGGAGAATTGTTTGTTATTTGATAACCGTGCAATATGC
TGTTAGGAATCAGAATGATTTCATGTGGACATGTTTGCACCTATTCTCAA
TTTTGGTTTGTATTCTCAGGGAGTTTTGCTGTTTGAAAAATAGGTGTCTT
TTTGAACTAGTGGTGTTGACTGTTAATTTTTCTAGATCTGAAACAGTGGG
CAGCTATCAGTGGAATTTGATTAAGAAATCTCTTATTCTCTGTGCCTTCT
TGTGTTTTTGTAGGTATCCTTATATGGCGGTGGTTCTAAATTTTAGTCAG
TCTTGGGCTTTGTATTGTCTAATTCAATTTTATACAGTCACAAAAGATGA
ATTGGCACACATAAAGCCATTGGCCAAGTTTTTGACATTTAAGTCAATTG
TATTTTTGACTTGGTGGCAAGGTGTAGCAATTGCTCTTCTTTATTCCCTT
GGTTTGTTTAAAAGTCCTATAGCTCAAGGCTTGCAGTTTAAATCCAGTGT
CCAAGACTTCATCATTTGTATAGAGGTATGCCTTCCATCATCTTCAAACA
TTTTTTGATGTTTCTCAAGTCTTTCAAGATTTCATGTCACCTGCTTCCAC
ATTCATAGTTATTCTATAACGTCATATTTTTCTGTAGTCTTTAAACATTG
T
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