FC921471

Overview
NameFC921471
Unique NameFC921471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13527 contig Ccv1_Contig13527:153..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.489e-73
Identity = 135/183 (73.77%), Postives = 151/183 (82.51%), Query Frame = 3
Query:    6 RVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 554
            R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT              +VILS+CLT+YG+ASFNEGEPSTAP LTLTGRKK PD LQTADGWAK         ISGVIWAYFLLYVL+LPY+VK
Sbjct:   36 RRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 9.460e-73
Identity = 135/184 (73.37%), Postives = 148/184 (80.43%), Query Frame = 3
Query:    3 FRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 554
            F V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQLQTADGWAK         ISGV WAYFLLYVL+LPYFVK
Sbjct:   36 FGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.330e-71
Identity = 126/177 (71.19%), Postives = 146/177 (82.49%), Query Frame = 3
Query:   24 RSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 554
            R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT +            V ILS+CLT+YG+ASFNEGEPSTAP LTLTGRKKE D+LQTA+GW++         +SG +WAYFLLYVL+LPYF K
Sbjct:   33 RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.156e-70
Identity = 130/178 (73.03%), Postives = 145/178 (81.46%), Query Frame = 3
Query:   21 KRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 554
            +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQLQ+ADGWAK         +SGV WA FL+YVL+LPY+ K
Sbjct:   39 RRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.763e-29
Identity = 63/150 (42.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query:   75 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 524
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+            ++I++ CL IYG+ SFN  +                +QLQ+A GW +         I G  +AY L+
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------EQLQSAKGWRQFTSGWLVGSIGGASFAYILI 138          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.439e-28
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 3
Query:   81 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 524
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT++            ++I SI + IYGI +F+  E +              D+LQTA+GW +         + G  +AY LL
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTFDNSENN--------------DKLQTANGWRQLASGFLLGAVGGAGFAYILL 138          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.697e-27
Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = 3
Query:   75 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 524
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+             D L+T++GW++         +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_GRATL (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.600e-27
Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = 3
Query:   81 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLP 542
            IQ  N DPF+G+L TP+++S      L+NLPAYR  +SPLLRG+E+G+AHG+ LVGPF K GPLRNT++            ++IL++CL++YG  SF++ +                D LQT +GW +         + G  +AY LL   N+P
Sbjct:    5 IQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPFDKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFDKDDAK--------------DLLQTTEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.847e-27
Identity = 62/156 (39.74%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   75 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLP 542
            + I+P N DPF+G+L TP+++S      L NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++            ++IL+ CL++YG  SF               R    D LQTA+GW +         + G  +AY LL   N+P
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKDPLQTAEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of FC921471 vs. ExPASy Swiss-Prot
Match: PSAL_SYNEN (Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.748e-26
Identity = 55/150 (36.67%), Postives = 89/150 (59.33%), Query Frame = 3
Query:   75 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 524
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+L G+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+             D L+T++GW++         +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
The following BLAST results are available for this feature:
BLAST of FC921471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA2.489e-7373.77Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH9.460e-7373.37Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU2.330e-7171.19Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL1.156e-7073.03Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH3.763e-2942.00Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_CYACA2.439e-2840.54Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_THEEB2.697e-2737.33Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_GRATL4.600e-2740.26Photosystem I reaction center subunit XI OS=Gracil... [more]
PSAL_PORPU7.847e-2739.74Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_SYNEN1.748e-2636.67Photosystem I reaction center subunit XI OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionC32105D02EF RVDevelopN Citrus clementina cDNA clone C32105D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921471 ID=FC921471; Name=FC921471; organism=Citrus clementina; type=EST; length=678bp
CATTCAGGGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAAAGCT
ATCCAATCTGAAAAGCCAACTTACCAAGTTATTCAGCCAATCAATGGTGA
TCCATTCATTGGAAGCTTGGAGACTCCAATTACATCAAGTCCATTGATTG
CATGGTACCTCTCAAATCTACCAGCTTATCGGACGGCAGTCAGCCCACTA
CTGAGAGGAGTAGAGGTGGGGTTGGCCCATGGATTCCTCCTTGTGGGTCC
ATTTGTTAAGGCAGGGCCATTGAGAAACACAGAAATAGCAGGACCAGCAG
GGTCATTGGCAGCTGGTGGCCTTGTTGTGATCCTCAGCATTTGCTTGACA
ATCTATGGAATTGCTTCATTCAATGAAGGAGAGCCATCCACTGCTCCAGG
CTTAACATTGACCGGAAGGAAGAAGGAGCCTGATCAGTTGCAAACAGCTG
ATGGGTGGGCTAAGTTCACTGGAGGATTCTTCTTTGGTGGAATTTCTGGT
GTCATTTGGGCTTATTTCCTGCTTTATGTCCTTAACCTTCCTTACTTCGT
TAAATAGAAATATGTAACGTCTACTTTTTGGTTTTAAGATCCCATGTATC
TCAATTTGCTACTCTGTAAATCTACCTGTTTGGGATTTTTATTGCAAATG
AAACTTGCTTCAGTTACCCAAAAAAAAA
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