FC921472

Overview
NameFC921472
Unique NameFC921472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14354 contig Ccv1_Contig14354:86..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921472 vs. ExPASy Swiss-Prot
Match: PM34_DICDI (Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 58/237 (24.47%), Postives = 104/237 (43.88%), Query Frame = 1
Query:   10 VDEKLNFALAKRKMGVDIESLSEATSGAIGSLLSTTILYPLDTCKTKYRAEVRAH--GQQK------YRKLSDVLWEAISNGQVHSLYQGLGTKNLQSFISQFVYFYGYSYFKRLYLKRSGNKSIGTKANLXXXXXXXXXXXXXXQPLDTASSRMQTSAFGKSKGLWKTLTEGT-WSDAFDGLGISLLLTSNPAIQYTVFDQLKR--RMLKGKQNKAGGTSPQALSAFAAFVLGAVS 687
            + EK++       +   +E+L  A SG +  + +  + YP  T  T+ + + +    GQQ       Y+   D     I      +LY GL +  +    S FVY+Y Y+  K + LK    + +GT  NL               P+   ++R+Q ++     G +K + +   +   + GL  +L+L SNP++Q+  +++L+   R   G+  K GG     L A A  + G V+
Sbjct:    1 MSEKIHITQNSGNVDHTVEALGHAISGGVAGMAAIALTYPFSTVSTRLQVQQKKQQQGQQSEITTVPYKNSIDAFKRIIKEENWRTLYSGLKSALIGIGASSFVYYYWYTLLKSISLKLKNKQELGTIENLAIAALAGCANVLTTLPIWVVNTRLQINSDKGIVGQFKYIIKNEGFGGLYKGLIPALILVSNPSVQFVSYEKLRALWRRQSGR-TKLGGLEVFILGAIAKLIAGIVT 236          
BLAST of FC921472 vs. ExPASy Swiss-Prot
Match: ANT1_YEAST (Peroxisomal adenine nucleotide transporter 1 OS=Saccharomyces cerevisiae GN=ANT1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.053e-14
Identity = 58/236 (24.58%), Postives = 98/236 (41.53%), Query Frame = 1
Query:   67 SLSEATSGAIGSLLSTTILYPLDTCKTKYRAEVRAHGQQ-----------KYRKLSDVLWEAISNGQVHSLYQGLGTKNLQSFISQFVYFYGYSYFKRLYLK-----------RSGNKSIGTKANLXXXXXXXXXXXXXXQPLDTASSRMQTSAFGKSKGLWKTLTE------GTWSDAFDGLGISLLLTSNPAIQYTVFDQLKRRMLKGKQNKAGGTSPQALSAFAAFVLGAVSR 690
            +L  A +GA+ S ++   +YPLD  KT  +++V     +           +Y+ + D +        +  LYQG+    + +F+  FVYF+ Y++ ++ Y+K           R G  +  T   L               P+   ++R QT    +S      + +      G  +  + GL   L LT NP+I Y  F +LK        N AG     +LSA   F+LG +S+
Sbjct:    3 TLESALTGAVASAMANIAVYPLDLSKTIIQSQVSPSSSEDSNEGKVLPNRRYKNVVDCMINIFKEKGILGLYQGMTVTTVATFVQNFVYFFWYTFIRKSYMKHKLLGLQSLKNRDGPITPSTIEELVLGVAAASISQLFTSPMAVVATRQQTVHSAESAKFTNVIKDIYRENNGDITAFWKGLRTGLALTINPSITYASFQRLKEVFFHDHSNDAG-----SLSAVQNFILGVLSK 233          
BLAST of FC921472 vs. ExPASy Swiss-Prot
Match: PM34_HUMAN (Peroxisomal membrane protein PMP34 OS=Homo sapiens GN=SLC25A17 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.509e-11
Identity = 61/223 (27.35%), Postives = 103/223 (46.19%), Query Frame = 1
Query:   64 ESLSEATSGAIGSLLSTTILYPLDTCKTKYRAEVRAHGQQKYRKLSDVLWEAISNGQVHSLYQGLGTKNLQSFISQFVYFYGYSYFKRLYLKRSGNKSIGTKANLXXXXXXXXXXXXXXQPLDTASSRMQ-------------TSAFGKSKGLWKTLTEGTWSDAFDGLGISLLLTSNPAIQYTVFDQLKRRMLKGKQNKAGGTSPQALSAFAAFVLGAVSRA 693
            ESL  A +GA+GS+ + T+ +PLDT + + + + +    +K +    VL E I    + + Y+G          S FVYFY ++  K L++K  G  S  T  +L               PL   ++R++             T+  G      + + +   S  ++G   SLLL  NPAIQ+  ++ LKR++LK +           LS+   F++GAV++A
Sbjct:    8 ESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEK----RKSKTTHMVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKALWVK--GQHST-TGKDLVVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYKGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKRMK---------LSSLDVFIIGAVAKA 214          
BLAST of FC921472 vs. ExPASy Swiss-Prot
Match: PM34_MOUSE (Peroxisomal membrane protein PMP34 OS=Mus musculus GN=Slc25a17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 62/224 (27.68%), Postives = 107/224 (47.77%), Query Frame = 1
Query:   64 ESLSEATSGAIGSLLSTTILYPLDTCKTKYRAEVRAHGQQKYRKLSDVLWEAISNGQVHSLYQGLGTKNLQSFISQFVYFYGYSYFKRLYLKRSGNKSIGTKANLXXXXXXXXXXXXXXQPLDTASSRMQ-TSAFGKSKGLWKTLTEGTWSDAF-------------DGLGISLLLTSNPAIQYTVFDQLKRRMLKGKQNKAGGTSPQALSAFAAFVLGAVSRA 693
            ESL  A +GA+GS+ + T+ +PLDT + + + + +    +K +    VL E I    + + Y+G          S FVYFY ++  K +++K  G +S  T  +L               PL   ++R++   A  +++ +  T  +G   DAF             +G   SLLL  NPAIQ+  ++ LKR++LK +           LS+   F++GA+++A
Sbjct:    8 ESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEK----RKSKTTHAVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKAVWVK--GQRS-STGKDLVVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIIPTNYKGI-IDAFHQIIRDEGILALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKRMK---------LSSLDVFIIGAIAKA 214          
The following BLAST results are available for this feature:
BLAST of FC921472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PM34_DICDI5.400e-1424.47Mitochondrial substrate carrier family protein Q O... [more]
ANT1_YEAST7.053e-1424.58Peroxisomal adenine nucleotide transporter 1 OS=Sa... [more]
PM34_HUMAN2.509e-1127.35Peroxisomal membrane protein PMP34 OS=Homo sapiens... [more]
PM34_MOUSE4.279e-1127.68Peroxisomal membrane protein PMP34 OS=Mus musculus... [more]
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Properties
Property NameValue
Genbank descriptionC32105D03EF RVDevelopN Citrus clementina cDNA clone C32105D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921472 ID=FC921472; Name=FC921472; organism=Citrus clementina; type=EST; length=752bp
GGTGATTTGGTTGATGAAAAATTAAATTTTGCTTTGGCCAAAAGAAAAAT
GGGAGTTGATATTGAATCTTTATCAGAGGCAACGTCGGGAGCGATAGGAT
CGCTGTTGAGCACCACAATCTTGTACCCGCTTGACACATGTAAGACCAAG
TATCGGGCCGAGGTTAGAGCTCACGGCCAGCAAAAGTACAGGAAACTCTC
AGATGTTTTATGGGAAGCTATATCCAATGGTCAAGTTCATTCGCTATACC
AGGGCCTAGGAACAAAAAATCTTCAGTCCTTTATTTCACAGTTTGTATAC
TTCTATGGGTATAGCTATTTCAAAAGGCTATATCTGAAAAGAAGTGGTAA
CAAATCGATTGGAACAAAAGCGAACTTGATAATTGCTGCTACTGCTGGGG
CTTGCACTGCCATCATCACTCAGCCCCTGGATACAGCCTCCTCAAGGATG
CAGACAAGTGCCTTTGGAAAATCCAAAGGGCTTTGGAAGACCCTCACAGA
GGGCACTTGGAGTGATGCATTTGATGGCCTAGGCATCTCTCTTTTGCTAA
CCTCAAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTGAAACGTCGA
ATGCTCAAGGGAAAACAAAATAAAGCAGGGGGCACATCTCCACAGGCCCT
TTCTGCCTTCGCGGCTTTTGTCTTGGGTGCAGTTTCAAGAGCATGCCACT
GTTCTGACATATCCTGCATCAGTGTAGGGTATGATTCAGCTGCCGACCCA
AT
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