FC921488

Overview
NameFC921488
Unique NameFC921488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921488 vs. ExPASy Swiss-Prot
Match: Y6373_DICDI (Probable serine/threonine-protein kinase DDB_G0291350 OS=Dictyostelium discoideum GN=DDB_G0291350 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 59/178 (33.15%), Postives = 90/178 (50.56%), Query Frame = 1
Query:  181 INENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTL---LDHAKVM---QTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVQPGNILI 696
            IN  +Y + R LGEGGF++VYLVK+                       S+   YA+K ++ Q  E +   + EI     F+H N++ L+DH+I    +N     K E  LL P + DGTL   +D+ + +    TKK  F     LQ F ++C  ++  H+  PP AH D++PGNI++
Sbjct:   17 INGVKYTVNRILGEGGFSFVYLVKDN----------------------SNSKKYALKVMICQTQESINTAKREINAFQTFNHENIMKLIDHSI----SNHSQDTK-EYRLLLPYYKDGTLQDLIDNQRTIYGKDTKKPLFKEKKCLQFFLKVCEAIQVFHNHSPPLAHRDIKPGNIVL 167          
BLAST of FC921488 vs. ExPASy Swiss-Prot
Match: STK16_HUMAN (Serine/threonine-protein kinase 16 OS=Homo sapiens GN=STK16 PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 56/176 (31.82%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  169 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVQPGNILI 696
            G V I+  RY  +++LGEGGF+YV LV+                       L D   YA+K++L    +  E  + E  +  LF+H N+L L+ + +      +E   KHEA+LL P    GTL +  + ++ K  F +   +L +   IC GL+ +H+    YAH D++P NIL+
Sbjct:   11 GTVIIDNKRYLFIQKLGEGGFSYVDLVEG----------------------LHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCL------RERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA--KGYAHRDLKPTNILL 156          
BLAST of FC921488 vs. ExPASy Swiss-Prot
Match: STK16_RAT (Serine/threonine-protein kinase 16 OS=Rattus norvegicus GN=Stk16 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 55/176 (31.25%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  169 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVQPGNILI 696
            G V I+  RY  +++LGEGGF+YV LV+                       L D   YA+K++L    +  E  + E  +  LF H N+L L+ +++      +E   KHEA+LL P    GTL +  + ++ +  F +   +L +   IC GL+ +H+    YAH D++P NIL+
Sbjct:   11 GTVIIDNKRYLFVQKLGEGGFSYVDLVEG----------------------LHDGHFYALKRILCHEQQDQEEAQREADMHRLFQHPNILRLMAYSL------KERGAKHEAWLLLPFFKRGTLWNEIERLKDQGNFLTEDQILPLLLGICRGLEAIHA--KGYAHRDLKPTNILL 156          
BLAST of FC921488 vs. ExPASy Swiss-Prot
Match: STK16_MOUSE (Serine/threonine-protein kinase 16 OS=Mus musculus GN=Stk16 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  169 GDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVQPGNILI 696
            G V I+  RY  +++LGEGGF+YV LV+                       L D   YA+K++L    +  E  + E  +  LF H N+L L+ +++      +E   KHEA+LL P    GTL +  + ++ +  F +   +L +   I  GL+ +H+    YAH D++P NIL+
Sbjct:   11 GTVIIDNKRYLFVQKLGEGGFSYVDLVEG----------------------LHDGHFYALKRILCHEQQDQEEAQREAEMHRLFQHPNILRLMAYSL------KERGAKHEAWLLLPFFKKGTLWNEIERLKDQGSFLTEDQILPLLLGISRGLEAIHA--KGYAHRDLKPTNILL 156          
BLAST of FC921488 vs. ExPASy Swiss-Prot
Match: Y0111_DICDI (Probable serine/threonine-protein kinase DDB_G0280111 OS=Dictyostelium discoideum GN=DDB_G0280111 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 48/180 (26.67%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  160 NGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIRVSS-LFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVQPGNILI 696
            N G  + I       ++Q+ EGGF+YV+LVK++ T+                        YA+K++LI++ ++L+ V+ EI +   L  H+N++ +LD+  ++ K N E       ++L      G L++  +   +    F+  ++L+IF  IC  + +MHS +P   H D++  N+L+
Sbjct:    4 NQGKTLKIGSYHLNFVKQIAEGGFSYVFLVKDSNTSKH----------------------YALKRILIRDEDELKGVKHEISIMKRLTKHKNIVKILDYHKVSDKNNTE------MFILMEYCSGGHLVEIMQKRLSSGSKFTDQEILKIFQDICESVAYMHSQQPLIIHRDLKVENVLL 155          
BLAST of FC921488 vs. ExPASy Swiss-Prot
Match: GAK_HUMAN (Cyclin G-associated kinase OS=Homo sapiens GN=GAK PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 53/193 (27.46%), Postives = 88/193 (45.60%), Query Frame = 1
Query:  124 SLSGLNALYDSVNGGGDVWINENRYRILRQLGEGGFAYVYLVKETVTTDASAASGGLANKVKDPSHLSDDGTYAMKKVLIQNNEQLEMVREEIR-VSSLFSHRNLLPLLDHAIIAVKANQEGSWKHEAYLLFPVHLDGTLLDHAKVMQTKKEFFSTSDVLQIFYQICAGLKHMHSLEPPYAHNDVQPGNILIT 699
            SL G +    S   G  V + E R R+ R L EGGFA+VY  ++                      +     YA+K++L    E+   + +E+  +  L  H N++     A I  + +  G  +   +LL      G L++  K M+++    S   VL+IFYQ C  ++HMH  +PP  H D++  N+L++
Sbjct:   16 SLGGASGRDQSDFVGQTVELGELRLRVRRVLAEGGFAFVYEAQD----------------------VGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAE---FLLLTELCKGQLVEFLKKMESRGPL-SCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLS 182          
The following BLAST results are available for this feature:
BLAST of FC921488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y6373_DICDI4.468e-2033.15Probable serine/threonine-protein kinase DDB_G0291... [more]
STK16_HUMAN6.039e-1731.82Serine/threonine-protein kinase 16 OS=Homo sapiens... [more]
STK16_RAT1.345e-1631.25Serine/threonine-protein kinase 16 OS=Rattus norve... [more]
STK16_MOUSE8.720e-1630.68Serine/threonine-protein kinase 16 OS=Mus musculus... [more]
Y0111_DICDI6.249e-1426.67Probable serine/threonine-protein kinase DDB_G0280... [more]
GAK_HUMAN5.849e-1227.46Cyclin G-associated kinase OS=Homo sapiens GN=GAK ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32105E07EF RVDevelopN Citrus clementina cDNA clone C32105E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921488 ID=FC921488; Name=FC921488; organism=Citrus clementina; type=EST; length=700bp
GATAATAAACAGAAGTAACTTATTTCCTCTCAACGAATCTGAGATACACA
ATGAGAAATTGAAAGTTATTTTATATCTTTTTCTCGTCGTTTTGTAAAAG
AAAAATAGAGAGAGATGGGGTGTTCGCTTTCGGGGCTGAACGCGCTGTAC
GACTCCGTAAACGGAGGAGGAGACGTGTGGATCAACGAGAACCGGTACAG
GATCTTGAGGCAGCTCGGTGAGGGTGGCTTCGCCTACGTGTATTTGGTCA
AGGAGACGGTCACCACCGACGCCTCTGCTGCCTCCGGTGGCCTCGCTAAT
AAAGTCAAAGATCCTTCTCATCTCTCCGATGATGGAACTTATGCAATGAA
GAAAGTTCTCATTCAGAACAATGAACAGCTTGAGATGGTCAGGGAGGAGA
TTCGTGTTTCGTCGTTATTTAGTCATCGTAATCTGCTTCCGCTACTTGAT
CATGCCATCATTGCTGTTAAGGCCAACCAAGAAGGATCATGGAAACATGA
AGCTTATTTGTTATTTCCAGTCCATCTGGATGGAACTTTACTGGACCATG
CCAAAGTGATGCAAACTAAAAAGGAATTCTTTTCTACCTCAGATGTTCTT
CAAATTTTCTACCAGATTTGTGCAGGACTCAAACATATGCACAGTCTTGA
GCCTCCATATGCCCATAATGATGTNCAACCTGGTAATATTCTTATTACTG
back to top