FC921507
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53 Identity = 107/205 (52.20%), Postives = 141/205 (68.78%), Query Frame = 3 Query: 69 SYGNSTLFRNPINDFKKSPYRAPMFRFKLFSKKIKARHA-----QNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668 S S F P N K A F ++ + I + A + ++ E + P P+F F+ YM++K +N+AL+ A+ LQ P KIH++MRYSLLAGGKRVRP LC+A+CELVGG++S AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H VFGE A+LAGDALL+ A EH+AV+ VS R+VRA+ E+ A+G Sbjct: 22 SRSKSKSFSLPFNPLKSL---AISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIG 223
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 4.750e-53 Identity = 102/149 (68.46%), Postives = 123/149 (82.55%), Query Frame = 3 Query: 225 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA-VNIAGVSPERVVRAIAEMCSAMG 668 +F F Y+IRKA+ VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CELVGG+ES AMPA CA+EMIHTMSLIHDDLP +DND+ RR KP +H+V+GE A+LAGDALLS A EH+A + VSP RVVRA+ E+ A+G Sbjct: 69 SFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIG 217
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 4.750e-53 Identity = 104/150 (69.33%), Postives = 123/150 (82.00%), Query Frame = 3 Query: 225 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG--VSPERVVRAIAEMCSAMG 668 +F F Y+I KAE VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CELVGG+ES AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H+VFGE A+LAGDALLS A EH+A + VSP RVVRA+ E+ A+G Sbjct: 73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIG 222
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 2.357e-52 Identity = 104/201 (51.74%), Postives = 139/201 (69.15%), Query Frame = 3 Query: 99 PINDFKKSPYRAPMFRFKLFS-----------KKIKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668 PI+ F R P+F S ++ +++ + F S+ +F F+ YMI KA VNKAL++AV+++ P+KIH++MRYSLLAGGKRVRP+LCIA+CEL GG ES AMP+ACA+EMIHTMSL+HDDLP +DND+ RR KP +H+VFGE A+LAGDALL+ A EH+A GVS ER+VR + E+ +G Sbjct: 14 PISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSS----SFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIG 210
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.207e-50 Identity = 103/205 (50.24%), Postives = 138/205 (67.32%), Query Frame = 3 Query: 78 NSTLFRNPINDFKKSPYRAPMFRFKLFSKK--------IKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668 N TL N F K P + KL K+ A ++ E+ P F F+ Y+ KA VNKALDEA++++ P IH+AMRYSLLAGGKRVRP+LC+A+CELVGG++ AM AACA+EMIHTMSLIHDDLP +DND+ RR KP +H+++GE A+LAGD+LL+ A EH+ + AGV+P R+V A+AE+ ++G Sbjct: 19 NQTLSYKSFNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEP-FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIG 222
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 9.270e-49 Identity = 96/148 (64.86%), Postives = 120/148 (81.08%), Query Frame = 3 Query: 228 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG-VSPERVVRAIAEMCSAMG 668 F F+ YMIRKAE VN ALD +V L+ P+ + +A+RYSLLAGGKRVRPLLCIA CELVGGDE+ AM AACA+EMIHT SLIHDDLP +DN + RR KP +H+V+GE A+LAGDALL+LA EH+ V +G V+PER++RA+ E+ A+G Sbjct: 64 FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIG 211
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 190.66 bits (483), Expect = 6.009e-48 Identity = 93/148 (62.84%), Postives = 119/148 (80.41%), Query Frame = 3 Query: 225 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668 TF F+ YM+ KAE VNKAL+EA+ + P+KIH+AMRY++LA GKRVRP+LC+ASCELVGG E+ AMPAACA+EMIHTMSLI DDLP +DND+ RR KP +H+V+GE AIL+G ALLSLA EH+ A +S ER+V A+ E+ ++G Sbjct: 82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTT--AEISSERMVWAVRELARSIG 227
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.748e-47 Identity = 92/148 (62.16%), Postives = 120/148 (81.08%), Query Frame = 3 Query: 225 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668 +F F+ YMI KAE +N+ALDEA+ L P+ IHKAMRY++LAGGKRVRP+LC+A+CELVGG+E A+ AACA+EMIHTMSLI DDLP +DND+ RR KP +H+VFGES AIL+G ALL+LA EH+ A VS +++VRA+ E+ ++G Sbjct: 78 SFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTE--ADVSSKKMVRAVKELAKSIG 223
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 2.445e-41 Identity = 87/154 (56.49%), Postives = 113/154 (73.38%), Query Frame = 3 Query: 234 FEEYMIRKAEQVNKALDEAVVL--------QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH-VAVNIAGVSPERVVRAIAEMCSAMG 668 F YM KA+ +NKALD ++ L +P +++HKAMRY+LL GGKRVRP+LC+ +CELVGG ES AMPAACA+EMIH SLI DDLP +D+D RR KP +H+VFGE T+ILA +AL SLA++ +A GV+ ERV+RA+ EM A+G Sbjct: 32 FISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVG 185
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.389e-36 Identity = 76/151 (50.33%), Postives = 102/151 (67.55%), Query Frame = 3 Query: 216 PLPT-FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAM 665 PL T F Y+ + E V L++++ P I+ ++RYSL AGGKR+RP+LC+ASCEL GG A+P ACALEMIHTMSLIHDDLP +DND RR KP +H ++GE AILAGDALL+ A E +A V + +V+ IA++ ++ Sbjct: 3 PLQTNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSV 153 The following BLAST results are available for this feature:
BLAST of FC921507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921507 ID=FC921507; Name=FC921507; organism=Citrus clementina; type=EST; length=669bpback to top |