FC921507

Overview
NameFC921507
Unique NameFC921507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 107/205 (52.20%), Postives = 141/205 (68.78%), Query Frame = 3
Query:   69 SYGNSTLFRNPINDFKKSPYRAPMFRFKLFSKKIKARHA-----QNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668
            S   S  F  P N  K     A  F ++   + I +  A     + ++ E  + P P+F F+ YM++K   +N+AL+ A+ LQ P KIH++MRYSLLAGGKRVRP LC+A+CELVGG++S AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H VFGE  A+LAGDALL+ A EH+AV+   VS  R+VRA+ E+  A+G
Sbjct:   22 SRSKSKSFSLPFNPLKSL---AISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIG 223          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.750e-53
Identity = 102/149 (68.46%), Postives = 123/149 (82.55%), Query Frame = 3
Query:  225 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA-VNIAGVSPERVVRAIAEMCSAMG 668
            +F F  Y+IRKA+ VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CELVGG+ES AMPA CA+EMIHTMSLIHDDLP +DND+ RR KP +H+V+GE  A+LAGDALLS A EH+A    + VSP RVVRA+ E+  A+G
Sbjct:   69 SFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIG 217          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.750e-53
Identity = 104/150 (69.33%), Postives = 123/150 (82.00%), Query Frame = 3
Query:  225 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG--VSPERVVRAIAEMCSAMG 668
            +F F  Y+I KAE VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CELVGG+ES AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H+VFGE  A+LAGDALLS A EH+A   +   VSP RVVRA+ E+  A+G
Sbjct:   73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIG 222          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.357e-52
Identity = 104/201 (51.74%), Postives = 139/201 (69.15%), Query Frame = 3
Query:   99 PINDFKKSPYRAPMFRFKLFS-----------KKIKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668
            PI+ F     R P+F     S           ++ +++  +   F S+     +F F+ YMI KA  VNKAL++AV+++ P+KIH++MRYSLLAGGKRVRP+LCIA+CEL GG ES AMP+ACA+EMIHTMSL+HDDLP +DND+ RR KP +H+VFGE  A+LAGDALL+ A EH+A    GVS ER+VR + E+   +G
Sbjct:   14 PISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSS----SFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIG 210          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.207e-50
Identity = 103/205 (50.24%), Postives = 138/205 (67.32%), Query Frame = 3
Query:   78 NSTLFRNPINDFKKSPYRAPMFRFKLFSKK--------IKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668
            N TL     N F K P +      KL  K+          A   ++   E+     P F F+ Y+  KA  VNKALDEA++++ P  IH+AMRYSLLAGGKRVRP+LC+A+CELVGG++  AM AACA+EMIHTMSLIHDDLP +DND+ RR KP +H+++GE  A+LAGD+LL+ A EH+  + AGV+P R+V A+AE+  ++G
Sbjct:   19 NQTLSYKSFNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEP-FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIG 222          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.270e-49
Identity = 96/148 (64.86%), Postives = 120/148 (81.08%), Query Frame = 3
Query:  228 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG-VSPERVVRAIAEMCSAMG 668
            F F+ YMIRKAE VN ALD +V L+ P+ + +A+RYSLLAGGKRVRPLLCIA CELVGGDE+ AM AACA+EMIHT SLIHDDLP +DN + RR KP +H+V+GE  A+LAGDALL+LA EH+ V  +G V+PER++RA+ E+  A+G
Sbjct:   64 FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIG 211          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.009e-48
Identity = 93/148 (62.84%), Postives = 119/148 (80.41%), Query Frame = 3
Query:  225 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668
            TF F+ YM+ KAE VNKAL+EA+ +  P+KIH+AMRY++LA GKRVRP+LC+ASCELVGG E+ AMPAACA+EMIHTMSLI DDLP +DND+ RR KP +H+V+GE  AIL+G ALLSLA EH+    A +S ER+V A+ E+  ++G
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTT--AEISSERMVWAVRELARSIG 227          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.748e-47
Identity = 92/148 (62.16%), Postives = 120/148 (81.08%), Query Frame = 3
Query:  225 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAMG 668
            +F F+ YMI KAE +N+ALDEA+ L  P+ IHKAMRY++LAGGKRVRP+LC+A+CELVGG+E  A+ AACA+EMIHTMSLI DDLP +DND+ RR KP +H+VFGES AIL+G ALL+LA EH+    A VS +++VRA+ E+  ++G
Sbjct:   78 SFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTE--ADVSSKKMVRAVKELAKSIG 223          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.445e-41
Identity = 87/154 (56.49%), Postives = 113/154 (73.38%), Query Frame = 3
Query:  234 FEEYMIRKAEQVNKALDEAVVL--------QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH-VAVNIAGVSPERVVRAIAEMCSAMG 668
            F  YM  KA+ +NKALD ++ L        +P +++HKAMRY+LL GGKRVRP+LC+ +CELVGG ES AMPAACA+EMIH  SLI DDLP +D+D  RR KP +H+VFGE T+ILA +AL SLA++  +A    GV+ ERV+RA+ EM  A+G
Sbjct:   32 FISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVG 185          
BLAST of FC921507 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.389e-36
Identity = 76/151 (50.33%), Postives = 102/151 (67.55%), Query Frame = 3
Query:  216 PLPT-FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPERVVRAIAEMCSAM 665
            PL T F    Y+  + E V   L++++    P  I+ ++RYSL AGGKR+RP+LC+ASCEL GG    A+P ACALEMIHTMSLIHDDLP +DND  RR KP +H ++GE  AILAGDALL+ A E +A     V  + +V+ IA++  ++
Sbjct:    3 PLQTNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSV 153          
The following BLAST results are available for this feature:
BLAST of FC921507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GGPPS_HEVBR1.250e-5352.20Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL4.750e-5368.46Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH4.750e-5369.33Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CATRO2.357e-5251.74Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN2.207e-5050.24Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH9.270e-4964.86Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP2_ARATH6.009e-4862.84Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP4_ARATH1.748e-4762.16Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP6_ARATH2.445e-4156.49Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA1.389e-3650.33Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionC32105G05EF RVDevelopN Citrus clementina cDNA clone C32105G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921507 ID=FC921507; Name=FC921507; organism=Citrus clementina; type=EST; length=669bp
GCCCCATTCCAGCCATTCTCATCAACAAAATTAAGATCTATACTATGGCA
GTCTCTGCAACAATTCCTAGCTATGGCAATTCAACCCTCTTCAGGAATCC
TATCAATGATTTCAAAAAATCACCCTACAGGGCTCCAATGTTCCGCTTTA
AACTATTTTCGAAGAAAATCAAAGCCAGGCATGCTCAAAACTCAGTATTC
GAGTCAACGGACATACCTCTACCTACTTTCCCGTTTGAAGAATACATGAT
CAGGAAGGCAGAACAAGTCAACAAAGCATTAGATGAGGCAGTGGTGTTGC
AACCTCCGGTAAAGATACACAAGGCTATGAGATACTCTCTTCTTGCTGGA
GGCAAGCGTGTGCGTCCTCTTTTATGTATTGCGTCGTGTGAATTAGTGGG
GGGAGATGAATCATGGGCCATGCCAGCGGCTTGCGCGTTAGAGATGATTC
ATACGATGTCCCTGATTCACGATGATCTCCCTTTCTTGGACAACGATGAG
CGGAGACGGTCAAAGCCCGCGAGTCATGAAGTATTCGGTGAGTCAACCGC
AATCCTTGCAGGGGATGCTCTGCTTTCCCTCGCCTTGGAACATGTAGCAG
TTAATATCGCTGGTGTTTCCCCGGAACGTGTGGTTCGAGCCATTGCTGAG
ATGTGCTCAGCCATGGGCG
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