FC921508

Overview
NameFC921508
Unique NameFC921508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921508 vs. ExPASy Swiss-Prot
Match: EXOS1_HUMAN (3'-5' exoribonuclease CSL4 homolog OS=Homo sapiens GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.483e-34
Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 3
Query:  123 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQNRARKVAKVR 677
            PGE L    E   G G Y    +G +++SL G L   S         P V V        +P+ G++V  +V+ + +R A   I+ VG+  ++  F G IR++DVRATE DKV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G  MVPISW EMQCP T     RKVA+V+
Sbjct:   10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQ 189          
BLAST of FC921508 vs. ExPASy Swiss-Prot
Match: EXOS1_MOUSE (3'-5' exoribonuclease CSL4 homolog OS=Mus musculus GN=Exosc1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 3
Query:  123 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQNRARKVAKVR 677
            PGE L    E   G G Y    +G +++SL G L   S         P V V        +P+ G+VV  +V+ + +R A   I+ VG+  ++  F G IR++D+RATE DKV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G  MVPISW EMQCP T     RKVA+V+
Sbjct:   10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKTS----ENGAVPVVSVMRETESQLLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKVARVQ 189          
BLAST of FC921508 vs. ExPASy Swiss-Prot
Match: CSL4_SCHPO (Exosome complex component csl4 OS=Schizosaccharomyces pombe GN=csl4 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 74/187 (39.57%), Postives = 107/187 (57.22%), Query Frame = 3
Query:  114 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST-AGGTMVPISWTEMQCPLTGQNRARKVAK 671
            LV PG+V+ +     A  G    K    + ++ TG+     P  +S      VE T       +P  GS+V+ARV+++  R A+ +I  V     +++F G+I  QD+RATE +KV +  SFRPGDIVRA V+SLGD  +YFL+TA+NDLGV+ A+S+  G  M P+ +  MQ   +G    RK AK
Sbjct:    3 LVLPGQVVARG----APNGEGTVKRGDYIISTRTGIF---DPEKNSVTYPRKVEETA-----VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFRPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SGYTEMRKCAK 176          
BLAST of FC921508 vs. ExPASy Swiss-Prot
Match: CSL4_YEAST (Exosome complex component CSL4 OS=Saccharomyces cerevisiae GN=CSL4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 64/179 (35.75%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  243 PDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAK----------------------------------SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST--AGGTMVPISWTEMQCPLTGQNRARKVAK 671
            P +   R T +   +     +P+ G +V+ RVT++  + A+ +I+ V  K                                   + E F GIIR QDVR+T+ D+V +   F+PGDIVRA VLSLGD   Y+L+TA+NDLGVV A +   AGG M    W  M  P+TG    RK AK
Sbjct:  112 PGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGSNGSGIVAAGGGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290          
The following BLAST results are available for this feature:
BLAST of FC921508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
EXOS1_HUMAN7.483e-3444.623'-5' exoribonuclease CSL4 homolog OS=Homo sapiens... [more]
EXOS1_MOUSE9.774e-3444.623'-5' exoribonuclease CSL4 homolog OS=Mus musculus... [more]
CSL4_SCHPO3.367e-2639.57Exosome complex component csl4 OS=Schizosaccharomy... [more]
CSL4_YEAST9.489e-2135.75Exosome complex component CSL4 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionC32105G06EF RVDevelopN Citrus clementina cDNA clone C32105G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921508 ID=FC921508; Name=FC921508; organism=Citrus clementina; type=EST; length=727bp
GCTGCTAGCTCTGTTCGATTGTAGTTGTCTCTTGTTTGTCTGAAAAAGAA
AAGCAGAAACAGAGGAAAAACAGAAACACGGGAGAAAAGATGGTAGTAAA
AGAAGAGATGGTATTGGTAACACCAGGAGAGGTGTTGGGGAAGGCAACAG
AAGTGAAAGCAGGGAAGGGAGCTTACGTGGCCAAACACAACGGTCTCGTC
TACGCTTCTCTCACTGGTCTCCTCCGCACTCTATCCCCTCCTCCCGACTC
CCCCGACCAGAGACCAACTGTGGAAGTAACTGGTCACAAGGCCCATGGCC
CTGTTCCAGAGCCTGGTTCTGTTGTCATTGCCCGAGTTACGAAAGTGATG
ACTAGGATGGCTTCAGCTGATATTATGTGTGTTGGTGCCAAGTCTGTGAG
AGAGAAATTTTCGGGCATAATCAGGCAGCAAGATGTTAGAGCAACTGAGA
TTGACAAAGTGGATATGCACTTGTCATTTCGGCCTGGGGACATTGTTAGA
GCTTCAGTGCTGTCCCTTGGAGATGCACGGGCATATTTTCTTTCCACTGC
AAAAAATGATCTGGGTGTTGTGTCAGCGGAGAGTACAGCTGGTGGAACCA
TGGTTCCAATAAGTTGGACCGAGATGCAATGCCCATTAACCGGCCAAAAC
CGAGCAAGAAAGGTTGCCAAGGTTAGGAGTTGACCCAGTGAAATTGATCT
TTGCGTAGAAGATCTTAATGTGATTTC
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