FC921518

Overview
NameFC921518
Unique NameFC921518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921518 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:  352 DQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYNQFK 654
            D  ++ GFE P+SP++SY+N+  G ED +++PP VPPHLQ TLL+ PA+  D    LP PQ+VILNHLY++      SVVALG THRF +KYVTVVLY   +
Sbjct:  187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQ 288
[Close]
BLAST of FC921518 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  361 TVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLY 642
            ++V FE P SPD SY    P  ED A++P AVPP L  TLL    + + + I   PQ+V+LNH++IE    P+S+VALG THRF SKY+TVVLY
Sbjct:  188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLG---TTEETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLY 278
The following BLAST results are available for this feature:
BLAST of FC921518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KINB2_ARATH5.672e-2454.90SNF1-related protein kinase regulatory subunit bet... [more]
KINB1_ARATH2.913e-2052.13SNF1-related protein kinase regulatory subunit bet... [more]
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Properties
Property NameValue
Genbank descriptionC32105H06EF RVDevelopN Citrus clementina cDNA clone C32105H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921518 ID=FC921518; Name=FC921518; organism=Citrus clementina; type=EST; length=746bp
ACTCTTGCTTGCAATTTGCTCTGCTGCTCTGCTCTTCTCTGGTCACAATA
TATTATATTTTTCTTCGAAATTCCTTTTTTTTCTCTGTTATTTCCCATCA
GTTTCATTCTTTTCCATTTTTTTTTTAATTTTCATTCATGAGAATTTTTC
AATTTCCAAAGATCTTTATGTAGTAAGTAGCCAATTGTATTCTTCTCATT
TCAGGTGGCGGTGAAAGGTTGCGTCTTGGTCATTGAAGAATTTTAGTCTT
AGCTCAGTCGGGGTCAGTTGTGTTGCCTTCTTTCTCTTTTGATGATTTGG
TGCCATTAGGATTTCTCATCCAACATGAACCAATATGATGATGAAAATCA
TGATCAGGCAACAGTAGTTGGATTTGAAGTCCCAAAGTCGCCCGATTCAA
GTTACAACAATGTGTATCCTGGGAACGAGGATGAGGCACGTGACCCTCCT
GCTGTGCCTCCTCATTTGCAACACACATTGCTAAGCTATCCAGCAAGCAG
GGATGCTTCTGGAATTCTTCCTGCACCCCAGAATGTGATTCTAAACCACC
TTTACATTGAGAATCGAGATGTGCCACGTTCTGTGGTGGCACTTGGATTT
ACTCATCGATTCCGTTCCAAGTATGTTACAGTTGTTCTATACAACCAGTT
CAAAGAAGGGGAAGTACCAGCACCTAATGAGTCAGGATAGAAATCTCTTG
GGTAGGCTGGATTGGTTTGCCCTGTACGATGAAATCGGTATGATGA
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