FC921527

Overview
NameFC921527
Unique NameFC921527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14328 contig Ccv1_Contig14328:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 65/93 (69.89%), Postives = 80/93 (86.02%), Query Frame = 1
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KL KAGQS
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQS 445          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 65/93 (69.89%), Postives = 80/93 (86.02%), Query Frame = 1
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KL KAGQS
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQS 445          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 65/93 (69.89%), Postives = 80/93 (86.02%), Query Frame = 1
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KL KAGQS
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQS 445          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1
Query:  424 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKIL-KEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            +G+C+PLA + IGT +HNIE NPGQG KL RAAGT A+I+ K   +  C+VRLPSG +KLID+RCRATIG VSN +HG +K  KAGQS
Sbjct:  359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQS 446          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            DI+ +IG+ +PL  + IGT+IHNIE+NPG+GGK+VR+AG+SA+++ +  + FC+++LPSG  +L      ATIG +SN  +   K+ KAG+S
Sbjct:  121 DIDIRIGNTLPLRNIPIGTMIHNIELNPGKGGKIVRSAGSSAQLISKDENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRS 212          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRSY (50S ribosomal protein L2 OS=Streptococcus suis (strain 05ZYH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N  HG   L KAG+S
Sbjct:  125 KVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_STRS2 (50S ribosomal protein L2 OS=Streptococcus suis (strain 98HAH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N  HG   L KAG+S
Sbjct:  125 KVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BACHK (50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+S
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BACCZ (50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+S
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRS 211          
BLAST of FC921527 vs. ExPASy Swiss-Prot
Match: RL2_BACC7 (50S ribosomal protein L2 OS=Bacillus cereus (strain AH187) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLXKAGQS 684
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+S
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRS 211          
The following BLAST results are available for this feature:
BLAST of FC921527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RM02_ORYSJ1.610e-3069.8960S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI1.610e-3069.8960S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA1.610e-3069.8960S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO5.016e-2463.6460S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RM02_RECAM8.286e-1947.8360S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RL2_STRSY8.286e-1951.1450S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_STRS28.286e-1951.1450S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_BACHK1.082e-1846.4650S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACCZ1.082e-1846.4650S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC71.082e-1846.4650S ribosomal protein L2 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32106A06EF RVDevelopN Citrus clementina cDNA clone C32106A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921527 ID=FC921527; Name=FC921527; organism=Citrus clementina; type=EST; length=695bp
GATCTCTCTAGTCTCTACTCACTTAGAAAAACTCTCACGGTGGCCGTCAC
CTTTCTTCTCAGTGTGATCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTGGGGTGCTTTAGCTTCTGTCACCGCCGGCAACATGTTGTGAT
AGACAGTGAAATCAACAGAAGAAAACAAAACGTAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTCCGTTCTCAACAACAACACTACT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCAAGCCA
TGGAGCTAAGAAGCTTANGAAGGCTGGTCAGAGCGTTGGTTGGGT
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