FC921542

Overview
NameFC921542
Unique NameFC921542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14546 contig Ccv1_Contig14546:6..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921542 vs. ExPASy Swiss-Prot
Match: LEA14_SOYBN (Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 36/137 (26.28%), Postives = 66/137 (48.18%), Query Frame = 2 
Query:  218 EETIGFGKPTADVTAVHIPKINLERADIVIDVXXXXXXXXXXXXXXXXXXVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIPYKPDI 628
            E+     KP A VT V   +++ +  + +  V                  ++S G+++ SG IPD G++ A     + +PV + +  + +   DI     I Y++ + L++D+PV G  T+PL + GEI +P   D+
Sbjct:   14 EKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPICEIKYSLKSAGKEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDLGLVIDLPVIGNFTIPLSQKGEIKLPTLSDM 150
The following BLAST results are available for this feature:
BLAST of FC921542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEA14_SOYBN5.928e-1126.28Desiccation protectant protein Lea14 homolog OS=Gl... [more]
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Properties
Property NameValue
Genbank descriptionC32106C04EF RVDevelopN Citrus clementina cDNA clone C32106C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921542 ID=FC921542; Name=FC921542; organism=Citrus clementina; type=EST; length=671bp
GGTAAATAGTGGCCTTGCTCTTCGTGGTTGCTGTCTTGAACTCATCAGAT
CTCTTTCAAAACTTCATCAACTGTCAGGTATGGCATCATCTGATAAGCCG
GAAGTAGTTGAAAGGGATGTTAAGGAGAAAGGGCACAAGGAGGATGACAA
AGAAGAGGGAAAAGGTGGATTTATCGAAAAAGTCAAGGATTTTATCCATG
ATATTGGTGAAAAGATTGAGGAAACAATTGGATTTGGGAAGCCAACTGCT
GATGTTACTGCAGTTCACATTCCTAAAATTAATCTTGAAAGGGCAGATAT
TGTTATTGACGTGCTCATTAAAAACCCGAATCCTATACCGATCCCTCTAA
TTGACATAAACTACTTGGTTGAGAGTGATGGAAGGAAATTGGTTTCTGGA
TTGATCCCAGATTCTGGAACTATTCATGCACATGGCGAGGAGACTGTCAA
AATCCCTGTTACTCTGATTTATGATGACATTAAAAATGCATATGATGATA
TCAAGCCTGGGATGATTATTCCATATAAGATCAAGGTTGACCTGATTGTA
GATGTGCCGGTTTTTGGAAGGTTGACTCTTCCACTTGAGAAAAATGGAGA
GATCCCCATTCCTTACAAGCCCGATATTGATCTCGAGAAGATTAAGTTTG
GGAGATTCTCATTTGAAAGAA
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