FC921549

Overview
NameFC921549
Unique NameFC921549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921549_ssr79 microsatellite FC921549_ssr79:79..93. BLAST: Citrus ESTs to Prunus persica proteins V1
FC921549_ssr4 microsatellite FC921549_ssr4:4..15. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11532 contig Ccv1_Contig11532:139..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: M2OM_DICDI (Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.270e-29
Identity = 75/180 (41.67%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  114 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVID 653
            +K FV GG+A +++   THP+D +KVRMQLQGE   V                                    P+ G + + V I QTEG   L+ G+SA++LRQ  Y+TTR GLYD++K     KD   +  ++K+  G++SGA GA VG PAD+ MVRMQADG+LP   RRNYK+V D
Sbjct:   25 LKQFVIGGLAGMLSSAFTHPIDSLKVRMQLQGEGTGVG-----------------------------------PKRGALKMLVHINQTEGFFTLYKGLSASLLRQATYTTTRFGLYDLIKDI-VAKDDKPLPFTQKIMVGMLSGAGGAIVGTPADLTMVRMQADGKLPFNLRRNYKNVFD 168          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: M2OM_MOUSE (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Mus musculus GN=Slc25a11 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 66/178 (37.08%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  123 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVIDA 656
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+ ++                             I +TEG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K   G+ +GA GA VG PA+VA++RM ADGRLP  QRR YK+V +A
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKTEGLKGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRRGYKNVFNA 167          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: M2OM_HUMAN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 65/178 (36.52%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  123 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVIDA 656
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+ ++                             I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K   G+ +GA GA VG PA+VA++RM ADGRLP  QRR YK+V +A
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRRGYKNVFNA 167          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: M2OM_BOVIN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 65/178 (36.52%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  123 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVIDA 656
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+                              + I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K   G+ +GA GA VG PA+VA++RM ADGRLP  QRR YK+V +A
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHAL-----------------------------ISILRAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPVDQRRGYKNVFNA 167          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: M2OM_RAT (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Rattus norvegicus GN=Slc25a11 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 64/178 (35.96%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  123 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVIDA 656
            F+ GG+A + A     PLDL+  RMQL GE     +   S      FH+ ++                             I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K   G+ +GA GA VG PA+VA++RM ADGRLP  QRR YK+V +A
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVXNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGPPAEVALIRMTADGRLPADQRRGYKNVFNA 167          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: M2OM_NEUCR (Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa GN=NCU10732 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 59/181 (32.60%), Postives = 93/181 (51.38%), Query Frame = 3
Query:  123 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNR---MTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVIDA 656
            F+ GG++ +VA     P+D+IKVR+QL GE  A                                     P+  P+ V   I  +     L++G+SA +LRQ +Y+T R+G +D    + + +   +   +    + +AGL +G + A +GNPAD+A++RMQ+DG  P A+R+NYKSVIDA
Sbjct:   45 FINGGLSGMVATTVIQPIDMIKVRIQLAGEGKAGG-----------------------------------PKPTPLGVTRDIIASGKAMDLYTGLSAGLLRQAVYTTARIGCFDTFMSRLSARAKEKGQSVGFKERASAGLAAGGLAAMIGNPADLALIRMQSDGLKPVAERKNYKSVIDA 190          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: DIC_MOUSE (Mitochondrial dicarboxylate carrier OS=Mus musculus GN=Slc25a10 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  132 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVID 653
            GG+AS  A C THPLDL+KV +Q Q E                                         ++    + +++ +T+G  AL++G+SA++ RQ  YS TR  +Y+ ++   T      +    KV  G ISG  G  VG PAD+  VRMQ D +LPP+QRRNY   +D
Sbjct:   12 GGLASCGAACCTHPLDLLKVHLQTQQE----------------------------------------VKLRMTGMALQVVRTDGFLALYNGLSASLCRQMTYSLTRFAIYETMRDYMTKDSQGPLPFYNKVLLGGISGLTGGFVGTPADLVNVRMQNDMKLPPSQRRNYSHALD 145          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: DIC_HUMAN (Mitochondrial dicarboxylate carrier OS=Homo sapiens GN=SLC25A10 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.349e-20
Identity = 56/174 (32.18%), Postives = 82/174 (47.13%), Query Frame = 3
Query:  132 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVID 653
            GG+AS  A C THPLDL+KV +Q Q E                                         ++    + +++ +T+G+ AL+SG+SA++ RQ  YS TR  +Y+ ++ +        +    KV  G +SG  G  VG PAD+  VRMQ D +LP  QRRNY   +D
Sbjct:   13 GGLASCGAACCTHPLDLLKVHLQTQQE----------------------------------------VKLRMTGMALRVVRTDGILALYSGLSASLCRQMTYSLTRFAIYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAGGFVGTPADLVNVRMQNDVKLPQGQRRNYAHALD 146          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: DIC1_CANGA (Mitochondrial dicarboxylate transporter OS=Candida glabrata GN=DIC1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 61/174 (35.06%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  132 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVID 653
            GG A I A  +THPLDL KVR  LQ   +  P  V  LR                                       I + EG+  L++G+SA++LRQ  Y+T R G+YD LK+    +D     +   + A ++SGA+G   GN AD+  +RMQ D  LP  +RRNYK+ ID
Sbjct:   13 GGAAGIFAVMNTHPLDLTKVR--LQAAPIPKPTIVQMLR--------------------------------------SILKNEGIVGLYAGLSASLLRQCTYTTARFGMYDALKEHVIPRDK-LTNMWYLLGASMVSGALGGLAGNFADLINIRMQNDSALPLDKRRNYKNAID 145          
BLAST of FC921549 vs. ExPASy Swiss-Prot
Match: UCP5_MOUSE (Brain mitochondrial carrier protein 1 OS=Mus musculus GN=Slc25a14 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 54/166 (32.53%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  117 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRL 614
            K FV GG+ASIVA   T P+DL K R+Q+QG+++ V  +   ++    FH+                               +I++ EG+ AL+SG++  +LRQ  Y T ++G+Y  LK+ + ++  +  TL   +  G++SG + +T+ NP DV  +RMQA G L
Sbjct:   42 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDV--RFKEIKYRGMFHAL-----------------------------FRIYKEEGILALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDE-TLLINMICGVVSGVISSTIANPTDVLKIRMQAQGSL 175          
The following BLAST results are available for this feature:
BLAST of FC921549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
M2OM_DICDI1.270e-2941.67Probable mitochondrial 2-oxoglutarate/malate carri... [more]
M2OM_MOUSE3.958e-2337.08Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_HUMAN1.152e-2236.52Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_BOVIN1.152e-2236.52Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_RAT1.273e-2135.96Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_NEUCR1.078e-2032.60Putative mitochondrial 2-oxoglutarate/malate carri... [more]
DIC_MOUSE1.408e-2033.33Mitochondrial dicarboxylate carrier OS=Mus musculu... [more]
DIC_HUMAN5.349e-2032.18Mitochondrial dicarboxylate carrier OS=Homo sapien... [more]
DIC1_CANGA3.834e-1835.06Mitochondrial dicarboxylate transporter OS=Candida... [more]
UCP5_MOUSE8.541e-1832.53Brain mitochondrial carrier protein 1 OS=Mus muscu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32106D02EF RVDevelopN Citrus clementina cDNA clone C32106D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921549 ID=FC921549; Name=FC921549; organism=Citrus clementina; type=EST; length=672bp
ATCAGCAAGCAAGCATTACTATTACATTACGCGCTTGACACTCTTCACTT
TGTTTCCTGATCCTCCAATTTTTTTTTAATTATTATTATTATTGTTATTT
TTAAATCATGGGTGTTAAAGGATTTGTTGAGGGCGGAATTGCTTCAATTG
TAGCTGGTTGCTCTACACATCCTCTCGATCTAATTAAAGTTCGCATGCAA
CTCCAAGGCGAAAACGTCGCCGTTCCCCAGCAAGTCCACTCTCTCCGTCC
GGCTCTGGCTTTTCATTCCAACTCAGCCACTGTCTTTCCCTCTAATTCCA
TCCATATCCCCACCACCGCACCAGAGCTGCCGCCACGTGTCGGTCCTATC
TCCGTCGGAGTCAAGATCTTTCAAACCGAAGGCGTCGCCGCTTTGTTCTC
TGGCGTTTCCGCCACCGTGCTGAGACAAACATTGTACTCCACCACTCGCA
TGGGGCTTTACGATGTGCTCAAACAAAAGTGGACTGACAAAGACTCCAAC
CGCATGACGTTGAGCCGCAAAGTAGCGGCCGGTTTGATCTCCGGAGCAGT
TGGGGCCACGGTTGGCAACCCCGCTGACGTGGCAATGGTCCGCATGCAAG
CCGACGGCCGCCTCCCACCGGCTCAGCGGCGTAACTATAAGAGCGTAATC
GACGCNGATCACGCAAATGTTG
back to top