FC921558

Overview
NameFC921558
Unique NameFC921558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length455
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14263 contig Ccv1_Contig14263:312..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921558 vs. ExPASy Swiss-Prot
Match: ZIP6_ARATH (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.115e-14
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:    2 AAGVILSTSLVHVLPDAFDALSDCQVASKHPWRDFPFXXXXXXXXXXXXXXXDITASAHV 181
            AAGVILSTSLVHVLP+AF++L+DCQV+S+HPW+DFPF               D+TAS H+
Sbjct:   69 AAGVILSTSLVHVLPEAFESLADCQVSSRHPWKDFPFAGLVTMIGAITALLVDLTASEHM 128

HSP 2 Score: 66.2402 bits (160), Expect = 7.263e-11
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:  333 RETDQEELIKLKQKLVSQVLEIGIIFHSVIIGVTMGMSQ 449
            +E  +EE++K+KQ+LVSQVLEIGIIFHSVIIGVTMGMSQ
Sbjct:  166 QENSEEEIVKMKQRLVSQVLEIGIIFHSVIIGVTMGMSQ 204
The following BLAST results are available for this feature:
BLAST of FC921558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZIP6_ARATH4.115e-1458.33Zinc transporter 6, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32106E11EF RVDevelopN Citrus clementina cDNA clone C32106E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921558 ID=FC921558; Name=FC921558; organism=Citrus clementina; type=EST; length=455bp
CGCAGCTGGTGTGATTCTCTCAACTTCTCTTGTCCACGTGCTCCCTGATG
CTTTTGATGCTCTCTCTGACTGCCAAGTGGCGTCCAAGCATCCTTGGAGA
GACTTCCCCTTCGCAGGTTTGGTTACTTTGATTGGTGCTTTGCTGGCTTT
GTTAGTTGACATAACTGCAAGTGCACACGTGGAGCATGGCCATGGCCATG
GCCATAACAACAACGACAATAAAGAAAGTAAAAATTACGTGCTTGTTGGG
ACGCAAGAGGAAATTGAAGGAATCAAAAAGGGAAATTATGAATTGGGAAA
ATTGGAAACTGGCCCACGGTGAAAGGACAAACAGAGAAACGGATCAAGAG
GAATTGATAAAGCTAAAGCAGAAGCTGGTGTCACAAGTTTTGGAGATTGG
GATAATTTTCCATTCTGTGATAATTGGTGTGACTATGGGCATGTCACAAA
TCAGT
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