FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14336 contig Ccv1_Contig14336:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.192e-86
Identity = 164/186 (88.17%), Postives = 175/186 (94.09%), Query Frame = 1
Query:  127 MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            M+IS+Q  DI G+RQ+GQDVRTQNVMACQAV+NIVK+SLGPVGLDKMLVDDIGDVTITNDGATIL+MLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRE+CKY+ EKL  KVEKLGK  L+NCAKTSMS KLI GDSDFFANLVVEAV +VKMTN
Sbjct:    1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTN 186          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 2.668e-70
Identity = 131/186 (70.43%), Postives = 162/186 (87.10%), Query Frame = 1
Query:  127 MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            M+  +  L I G RQ+G  VRTQNVMA  +++NIVKSSLGPVGLDKMLVDDIGDVT+TNDGATIL++LEVEHPAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSIISGYR+A +EACKY++E L   V++LG+DSL+N AKTSMS K+IG D++FF+ +VV+A Q+VK+T+
Sbjct:    1 MSTLASPLSIAGTRQSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDELGRDSLINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITD 186          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.551e-70
Identity = 127/180 (70.56%), Postives = 161/180 (89.44%), Query Frame = 1
Query:  145 TLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            ++ ILGER  GQDVRT NV A  A+ANIVKSSLGP GLDKMLVDD+GDVTITNDGATIL+ LEV+HPAAKV+VEL++LQD+EVGDGTTSVVI+AAELLKRAN+L++NK+HPTSII+G+++A +EAC Y+ E LA+ VE+LG+++L+N AKTSMS KLIG +S+ F+ +VV+AV++VKMTN
Sbjct:    4 SVGILGERDQGQDVRTNNVTAVMAIANIVKSSLGPQGLDKMLVDDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTYIKEHLAISVEELGREALINAAKTSMSSKLIGPESNLFSQIVVDAVESVKMTN 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.551e-70
Identity = 131/179 (73.18%), Postives = 155/179 (86.59%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            L + GER  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTSII GYRLA +EA +Y+NE L +  ++LGKD L+N AKTSMS K+IG D DFFAN+VV+AV AVK T+
Sbjct:    5 LSVFGERTTGESIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELGKDCLINAAKTSMSSKIIGIDGDFFANMVVDAVLAVKYTD 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.853e-69
Identity = 128/179 (71.51%), Postives = 156/179 (87.15%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            L + G+R  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +EA +Y+NE L V  ++LG+D L+N AKTSMS K+IG + DFFAN+VV+AV A+K T+
Sbjct:    5 LSVFGDRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTD 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.032e-69
Identity = 128/179 (71.51%), Postives = 156/179 (87.15%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            L + G+R  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +EA +Y+NE L +  ++LG+D L+N AKTSMS K+IG + DFFAN+VV+AV AVK T+
Sbjct:    5 LSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTD 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.912e-68
Identity = 131/186 (70.43%), Postives = 154/186 (82.80%), Query Frame = 1
Query:  127 MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            MA     L +LGER +G  VR QNV A   +ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELAELQD+EVGDGTTSVVI+AAELLK +++LV+ KIHPTSII GYRLA +EA +Y+NE L +  ++LG+D L+N AKTSMS K+IG D DFFA++VV+A  AVK T+
Sbjct:    1 MAALEGPLAVLGERSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELGRDCLINSAKTSMSSKIIGIDGDFFASMVVDAASAVKYTD 186          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.912e-68
Identity = 127/179 (70.95%), Postives = 156/179 (87.15%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            L + G+R  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +EA +Y++E L +  ++LG+D L+N AKTSMS K+IG + DFFAN+VV+AV AVK T+
Sbjct:    5 LSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTD 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.912e-68
Identity = 127/179 (70.95%), Postives = 156/179 (87.15%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            L + G+R  G+ +R+QNVMA  ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +EA +Y++E L +  ++LG+D L+N AKTSMS K+IG + DFFANLVV+AV A+K T+
Sbjct:    5 LSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTD 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 2.497e-68
Identity = 127/179 (70.95%), Postives = 155/179 (86.59%), Query Frame = 1
Query:  148 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTN 684
            L + G+R  G+ VR+QNVMA  ++ANIVKSS GPVGLDKMLVDDIGDVTITNDGATILK+LEVEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +EA +Y+NE L +  ++LG+D L+N AKTSMS K+IG + D+FAN+VV+AV AVK T+
Sbjct:    5 LSVFGDRSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTD 183          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TCPA_ARATH1.192e-8688.17T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPA_DROME2.668e-7070.43T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPA_TETPY4.551e-7070.56T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPA_MONDO4.551e-7073.18T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA_HUMAN3.853e-6971.51T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPA_RAT5.032e-6971.51T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_PALPA1.912e-6870.43T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA_CRIGR1.912e-6870.95T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPA_BOVIN1.912e-6870.95T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPA2_MOUSE2.497e-6870.95T-complex protein 1 subunit alpha B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
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