FC921566

Overview
NameFC921566
Unique NameFC921566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8267 contig Ccv1_Contig8267:895..1588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921566 vs. ExPASy Swiss-Prot
Match: YZ37_SYNY3 (Uncharacterized sugar kinase slr0537 OS=Synechocystis sp. (strain PCC 6803) GN=slr0537 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 70/234 (29.91%), Postives = 104/234 (44.44%), Query Frame = 1 
Query:    1 GSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYREKLRRANVAFCS--EPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCV-PVDTCGAGDAYA 693
            GS +N+LV+LA+LGG               VG D  G FY + L    +      E   +G TG  +V  TPDA R M A+ G S +++      + + ++    +EGYL   P       +A  +A +SG    ++ SD    +   D   E++G+  D++FAN  EA      +          Y        ++T G  GS I   GE +    +P V P+DT GAGD YA
Sbjct:   62 GSAANTLVSLAQLGGTGF--------YACKVGKDEAGAFYLQDLNDCGLDTNPHHETAGEGITGKCLVFVTPDADRTMNAFLGISGSLSVTEMDWSALKQSQYLYLEGYLVTSPSAKAACIEAKAIAEQSGVKTCLSLSDPNMAKFFQDGLKEMLGSGVDLLFANEAEA---LEMAGTSDLNQAIAYCKSIAKNFALTRGGAGSLI-FDGENLLTIGTPKVQPIDTVGAGDMYA 283
The following BLAST results are available for this feature:
BLAST of FC921566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YZ37_SYNY34.112e-1829.91Uncharacterized sugar kinase slr0537 OS=Synechocys... [more]
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Properties
Property NameValue
Genbank descriptionC32106G02EF RVDevelopN Citrus clementina cDNA clone C32106G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921566 ID=FC921566; Name=FC921566; organism=Citrus clementina; type=EST; length=694bp
GGATCTCTTTCCAACAGTCTGGTGGCCTTGGCAAGGCTTGGGGGAAAGCC
CATTGGTGGCCCAGCTTTAAATGTAGCCATGACGGGCAGCGTCGGGAGCG
ATCCATTGGGTGGCTTCTACAGGGAAAAATTGCGTCGGGCGAATGTGGCA
TTTTGCTCTGAACCCATCAAGGACGGCACAACAGGAACAGTGATAGTTCT
CACTACTCCAGATGCTCAACGCGCGATGCTTGCATACCAGGGTACATCAT
CGACTATCAACTATGATCCCTGCTTGGTTAACCTTATTTCCAAGACAAAT
ATATTTATTGTTGAAGGCTATTTGTTTGAACTTCCTGATACAATTAGAAC
AATTACAAAAGCTTGTGAAGTAGCTCACAGAAGTGGCGCTCTGGTTGCAG
TAACAGCATCAGATGTGACGTGCATTGAGAGACATTATGATGACTTCTGG
GAAATTGTTGGAAACTATGCCGACATCGTGTTTGCAAACAGTGACGAAGC
CAGAGCTTTTTGCCACTTCTCTTCAAAGGAAAGCCCAGAGTCAACCACAA
GGTACTTAAGCCACTTTGTTCCCTTAGTTTCAGTCACAGATGGGGCAAGA
GGCTCTTACATAGGTGTCAAAGGAGAAGCTGTATATATTCCTCCTTCTCC
ATGTGTCCCTGTGGACACTTGTGGTGCTGGTGATGCATACGCAT
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