FC921582

Overview
NameFC921582
Unique NameFC921582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14342 contig Ccv1_Contig14342:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921582 vs. ExPASy Swiss-Prot
Match: Y3972_ARATH (Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.533e-54
Identity = 109/169 (64.50%), Postives = 124/169 (73.37%), Query Frame = 2 
Query:  179 MSRRPVNPARRLADGGGIPFVGSAHSKSRSSPXXXXXXXXXXXXXXXXXXYSGSGKTIIEKEALSKVEGVVSCTLEVQRALPVLKKAYGDSMLKILHVGPETCSVVSKLLKEEDTEAWGVEPYDLYDADANCRSLVRKGIVRVADIKFPLPYQDKSFSLVIVSDAVDYL 685
            M+RR V   RR+ DGG  PF G+ HSKSRSSP                  YSG G     KE +SKV G  SCT EVQRA+PVLKKAYGD M K+LHVGP+TCSVVS LLKEE+TEAWGVEPYD+ DAD++C+S V KG+VRVADIKFPLPY+ KSFSLVIVSDA+DYL
Sbjct:    1 MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSIKE-VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVEPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYL 168
The following BLAST results are available for this feature:
BLAST of FC921582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3972_ARATH4.533e-5464.50Uncharacterized protein At3g49720 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32107A04EF RVDevelopN Citrus clementina cDNA clone C32107A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921582 ID=FC921582; Name=FC921582; organism=Citrus clementina; type=EST; length=685bp
GGAAAGATTCTTCGGCGAATTAAAAATTATCAAACATCGGATAAATAATT
TATTTAAATCAAAACCAAGTTGAAAAACAAATCCCATTTCCCTCTTTCCC
ACTGCGAACAGATCTGGATCGTGCTCTATACTCGACCCATCTGATCGTTG
ATCTCAGGCTCTCCATTGTTACATAGTCATGTCAAGGAGGCCAGTGAATC
CTGCTCGACGCCTTGCTGATGGTGGAGGCATCCCTTTTGTGGGTTCAGCA
CATTCAAAATCACGCTCATCACCTTTGCTGTCTGTTATACTTTTGGCTGT
GGGTGCAGTACTCCTTATTGGCTATTTATACAGTGGGTCAGGTAAAACAA
TCATTGAAAAAGAGGCATTGAGTAAAGTTGAAGGCGTTGTTTCGTGCACT
TTAGAAGTCCAGAGAGCATTACCTGTTCTTAAGAAGGCATATGGTGACAG
CATGCTCAAAATACTACATGTAGGACCTGAAACTTGTTCAGTGGTATCTA
AATTGTTGAAAGAGGAGGATACTGAAGCATGGGGTGTTGAACCATATGAC
TTATACGACGCTGATGCCAACTGCAGGAGTCTTGTGCGAAAAGGCATTGT
GCGGGTGGCCGATATTAAGTTTCCTCTGCCCTATCAGGACAAGTCATTTT
CTCTAGTGATAGTGTCAGATGCTGTGGATTACTTG
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