FC921583

Overview
NameFC921583
Unique NameFC921583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921583_ssr46 microsatellite FC921583_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15373 contig Ccv1_Contig15373:2..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.259e-94
Identity = 165/187 (88.24%), Postives = 175/187 (93.58%), Query Frame = 1
Query:  148 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS 708
            T   M FQKIKVANPIVEMDGDEMTR+ WK IKDKLIFPF+ELDIKYFDLGLP RD T+DKVTVESAEATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPGWTKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVPEG+ E T+LEVYNFTGEGGVAL+
Sbjct:   18 TTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALA 204          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.259e-94
Identity = 166/183 (90.71%), Postives = 171/183 (93.44%), Query Frame = 1
Query:  160 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS 708
            M F KIKV NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKTE EVYNFTG GGVALS
Sbjct:    1 MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALS 183          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.821e-93
Identity = 165/183 (90.16%), Postives = 171/183 (93.44%), Query Frame = 1
Query:  160 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS 708
            MAFQKI V NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE EVYNFTG GGVALS
Sbjct:    1 MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALS 183          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 4.485e-92
Identity = 161/182 (88.46%), Postives = 172/182 (94.51%), Query Frame = 1
Query:  163 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS 708
            AFQKIKVANPIVEMDGDEMTRV WKSIKDKLI PFLELDIKY+DLGLP RD TDDKVT+ESAEATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PGWTK ICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG+ E+TE EV+NFTGEGGV+L+
Sbjct:    3 AFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLA 184          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.270e-70
Identity = 126/186 (67.74%), Postives = 151/186 (81.18%), Query Frame = 1
Query:  148 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 705
            T++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV +
Sbjct:   35 TRRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGM 219          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.826e-70
Identity = 124/181 (68.51%), Postives = 149/181 (82.32%), Query Frame = 1
Query:  163 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 705
            A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV +
Sbjct:    9 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGM 188          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 4.826e-70
Identity = 125/185 (67.57%), Postives = 150/185 (81.08%), Query Frame = 1
Query:  151 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 705
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV +
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGM 219          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 263.462 bits (672), Expect = 8.231e-70
Identity = 124/185 (67.03%), Postives = 150/185 (81.08%), Query Frame = 1
Query:  151 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 705
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV +
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPA-GGVGM 219          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 8.231e-70
Identity = 124/185 (67.03%), Postives = 151/185 (81.62%), Query Frame = 1
Query:  151 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 705
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      E EVYNF   GGV +
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPA-GGVGM 219          
BLAST of FC921583 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.404e-69
Identity = 124/185 (67.03%), Postives = 150/185 (81.08%), Query Frame = 1
Query:  151 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVAL 705
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV +
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPA-GGVGM 219          
The following BLAST results are available for this feature:
BLAST of FC921583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_MEDSA6.259e-9488.24Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_TOBAC6.259e-9490.71Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU1.821e-9390.16Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHC_SOYBN4.485e-9288.46Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MACFA1.270e-7067.74Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG4.826e-7068.51Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_HUMAN4.826e-7067.57Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE8.231e-7067.03Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN8.231e-7067.03Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT1.404e-6967.03Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32107A05EF RVDevelopN Citrus clementina cDNA clone C32107A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921583 ID=FC921583; Name=FC921583; organism=Citrus clementina; type=EST; length=710bp
GAGTCCTGGTCAAACTCGAAAGCAGCAGCATTTCAATTTTCGTAGTATTA
TTATTATTGCTTCTTGCTGCTTCTTTTTGTCCACACGACCTCGGCACCTC
CGCTCTGCCCTATTATCTCTCTCTAGTTGTGAATCAACCGAAACTGAACA
AAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCAATCCCATCGTCGA
AATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGATTAAGGATA
AGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCGACCTTGGC
CTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAAAGTGCAGA
AGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTATTACTCCAG
ATGAAGCTCGTGTCAAGGAATTTGTCTTGAAACAGATGTGGAAGAGTCCA
AATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGAGAACCAAT
CATTTGCAAAAATGTCCCTCGGCTTATTCCAGGCTGGACAAAGCCCATAT
GCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTGATACAGTT
ATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAGGGAAAAGA
TGAGAAGACAGAGTTGGAGGTTTACAACTTTACGGGTGAGGGTGGAGTTG
CATTGTCCAT
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