FC921593

Overview
NameFC921593
Unique NameFC921593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15373 contig Ccv1_Contig15373:122..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 9.346e-82
Identity = 146/167 (87.43%), Postives = 154/167 (92.22%), Query Frame = 2
Query:   29 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP*GK 529
            T   M FQKIKVANPIVEMDGDEMTR+ WK IKDKLIFPF+ELDIKYFDLGLP RD T+DKVTVESA ATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIP WTKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVP G+
Sbjct:   18 TTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQ 184          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 7.912e-81
Identity = 145/162 (89.51%), Postives = 150/162 (92.59%), Query Frame = 2
Query:   41 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP*G 526
            M F KIKV NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESA AT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+P WTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVP G
Sbjct:    1 MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEG 162          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 1.350e-80
Identity = 144/162 (88.89%), Postives = 151/162 (93.21%), Query Frame = 2
Query:   44 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP*GK 529
            AFQKIKVANPIVEMDGDEMTRV WKSIKDKLI PFLELDIKY+DLGLP RD TDDKVT+ESA ATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+P WTK ICIGRHAFGDQYRATDTVI+G GKLKLVFVP G+
Sbjct:    3 AFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQ 164          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 3.006e-80
Identity = 144/162 (88.89%), Postives = 150/162 (92.59%), Query Frame = 2
Query:   41 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP*G 526
            MAFQKI V NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTVESA AT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+P WTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVP G
Sbjct:    1 MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEG 162          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.109e-66
Identity = 116/164 (70.73%), Postives = 139/164 (84.76%), Query Frame = 2
Query:   29 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 520
            T++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+P WTKPI IGRHA GDQY+ATD V    G  K+VF P
Sbjct:   35 TRRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTP 198          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.215e-66
Identity = 115/159 (72.33%), Postives = 137/159 (86.16%), Query Frame = 2
Query:   44 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 520
            A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+P WTKPI IGRHA GDQY+ATD V+   G  K+VF P
Sbjct:    9 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTP 167          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 4.215e-66
Identity = 115/163 (70.55%), Postives = 138/163 (84.66%), Query Frame = 2
Query:   32 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 520
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+P WTKPI IGRHA GDQY+ATD V    G  K+VF P
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTP 198          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 9.389e-66
Identity = 114/163 (69.94%), Postives = 139/163 (85.28%), Query Frame = 2
Query:   32 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 520
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+P WTKPI IGRHA GDQY+ATD V+   G  K+VF P
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTP 198          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.602e-65
Identity = 114/163 (69.94%), Postives = 138/163 (84.66%), Query Frame = 2
Query:   32 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 520
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+P WTKPI IGRHA GDQY+ATD V+   G  KLVF P
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTP 198          
BLAST of FC921593 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 1.602e-65
Identity = 114/163 (69.94%), Postives = 138/163 (84.66%), Query Frame = 2
Query:   32 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESA*ATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPSWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 520
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+P WTKPI IGRHA GDQY+ATD V+   G  KLVF P
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTP 198          
The following BLAST results are available for this feature:
BLAST of FC921593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_MEDSA9.346e-8287.43Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_TOBAC7.912e-8189.51Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN1.350e-8088.89Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHC_SOLTU3.006e-8088.89Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MACFA1.109e-6670.73Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG4.215e-6672.33Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_HUMAN4.215e-6670.55Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN9.389e-6669.94Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT1.602e-6569.94Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE1.602e-6569.94Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32107B05EF RVDevelopN Citrus clementina cDNA clone C32107B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921593 ID=FC921593; Name=FC921593; organism=Citrus clementina; type=EST; length=546bp
GCTTTGCTTGTGAATCAACCGAAACTGAACAAAGAAGAAAATGGCTTTTC
AGAAGATCAAGGTCGCCAATCCCATCGTCGAAATGGACGGAGATGAAATG
ACTCGAGTTTTCTGGAAATCGATTAAGGATAAGCTTATTTTCCCTTTTCT
GGAGTTGGACATAAAGTACTTCGACCTTGGCCTTCCGAATCGTGATGCAA
CTGATGACAAAGTTACCGTTGAAAGTGCATAAGCCACTCTCAAGTACAAT
GTAGCGATCAAGTGTGCTACTATTACTCCAGATGAAGCTCGTGTCAAGGA
ATTTGTCTTGAAACAGATGTGGAAGAGTCCAAATGGGACAATCAGGAATA
TTTTGAATGGCACTGTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCT
CGGCTTATTCCAAGCTGGACAAAGCCCATATGCATTGGCAGGCATGCTTT
TGGTGATCAATATCGAGCAACTGATACAGTTATTCAAGGACCTGGCAAAC
TTAAATTGGTGTTTGTACCATAGGGAAAGATGAGAATACAGAGTTG
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