FC921599

Overview
NameFC921599
Unique NameFC921599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1877 contig Ccv1_Contig1877:144..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 5.451e-111
Identity = 184/229 (80.35%), Postives = 210/229 (91.70%), Query Frame = 1
Query:    1 EKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            E L+ QL +L+ AGVDG+MVDVWWGIIE KGP+QYDWSAY+SLF+L+Q+  LKLQAIMSFHQCGGNVGDVV IPIP+WVL+IGE++PDIFYTNRSG R+KEYLTIGVD+KP+F GRTAIE+YSDYMKSFR+NM DFL++ VIIDIEVGLGPAGELRYPSYP++QGWVFPGIGEFQCYDKYLKAEFK AA  +GH EWELPD+AGTYND PESTEFFKTNGTYL+E+  F
Sbjct:   34 EGLKEQLVQLREAGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTIGVDNKPIFHGRTAIEVYSDYMKSFRENMSDFLKSEVIIDIEVGLGPAGELRYPSYPQNQGWVFPGIGEFQCYDKYLKAEFKAAAARAGHSEWELPDDAGTYNDVPESTEFFKTNGTYLTEKGKF 262          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.706e-110
Identity = 181/227 (79.74%), Postives = 211/227 (92.95%), Query Frame = 1
Query:    7 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            L+ QL +L+AAGVDG+MVDVWWGIIE KGP++YDWSAY+SLF+L+Q+  LKLQAIMSFHQCGGNVGDVVTIPIP+WVL+IGE++PDIFYTNRSG R+KEYLT+GVD+KP+F GRTAIEIYSDYMKSFR+NM +FL++ +IIDIEVGLGPAGELRYPSYP++QGWVFPGIGEFQCYDKYLKA+FK AA  +GH EWELPD+AGTYND PESTEFFKTNGTYL+E+  F
Sbjct:   36 LKEQLVQLRAAGVDGVMVDVWWGIIEQKGPKEYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVTIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTVGVDNKPIFHGRTAIEIYSDYMKSFRENMSEFLKSELIIDIEVGLGPAGELRYPSYPQNQGWVFPGIGEFQCYDKYLKADFKAAAAKAGHSEWELPDDAGTYNDIPESTEFFKTNGTYLTEKGKF 262          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.144e-107
Identity = 177/227 (77.97%), Postives = 206/227 (90.75%), Query Frame = 1
Query:    7 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            L+ QL +L+AAGVDG+M+DVWWGIIE KGP++YDWSAY+SLF+L+Q+  LKLQAIMSFHQCGGNVGDVV IP+PKWVL+IGE++PDIFYTNRSG RN+EYL+IGVD+KP+F GRTAIEIYSDYMKSFR+NM D L++ VIIDIEVGLGPAGELRYPSYP++QGW FPGIGEFQCYDKYL+  FK AA  +GH EWELPD+AGTYND PESTEFFKTNGTYL+E+  F
Sbjct:   36 LKEQLVQLRAAGVDGVMIDVWWGIIEQKGPKEYDWSAYKSLFQLVQKCGLKLQAIMSFHQCGGNVGDVVNIPLPKWVLDIGESDPDIFYTNRSGIRNQEYLSIGVDNKPIFHGRTAIEIYSDYMKSFRENMSDLLKSEVIIDIEVGLGPAGELRYPSYPQNQGWQFPGIGEFQCYDKYLRESFKAAAAKAGHSEWELPDDAGTYNDVPESTEFFKTNGTYLTEKGKF 262          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 387.497 bits (994), Expect = 3.657e-107
Identity = 177/227 (77.97%), Postives = 204/227 (89.87%), Query Frame = 1
Query:    7 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            L+ QL +L+AAGVDG+MVDVWWGIIE KGP+QYDW AYRSLF+L+Q+  L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DIFYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGLGPAGELRYPSYP+SQGW FP IGEFQCYDKYLKA+FK A   +GHPEWELPD+AG YND PEST FFK+NGTY++E+  F
Sbjct:   36 LKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKF 262          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.217e-102
Identity = 168/230 (73.04%), Postives = 203/230 (88.26%), Query Frame = 1
Query:    1 EKLESQLKELKA-AGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            E LE+QLK LK  AGVDG+MVDVWWGIIESKGP+QYDW+AY++LF+LI +  LK+QAIMSFHQCGGNVGD+VTIPIP+WV ++G+ +PDI+YTNR G R+ EYL+IGVD+ PLF GRTA+++YSDYM SF++NM D +EAGVI+DIEVGLGPAGELRYPSYP+SQGWVFPGIGEFQCYDKYLK +FKEAA  +GHPEW+LP++AG YND PE T FFK +GTY+SE+  F
Sbjct:   35 ETLETQLKRLKEEAGVDGVMVDVWWGIIESKGPKQYDWTAYKTLFQLIARLGLKIQAIMSFHQCGGNVGDIVTIPIPQWVRDVGDNDPDIYYTNRKGTRDIEYLSIGVDNLPLFAGRTAVQLYSDYMSSFKENMADLIEAGVIVDIEVGLGPAGELRYPSYPQSQGWVFPGIGEFQCYDKYLKKDFKEAAAKAGHPEWDLPEDAGEYNDKPEETGFFKKDGTYVSEKGKF 264          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.998e-101
Identity = 161/229 (70.31%), Postives = 198/229 (86.46%), Query Frame = 1
Query:    1 EKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            +++ +QLK+L  AGVDG+M+DVWWG++E KGP+ YDWSAY+ +F+L+ +  LKLQAIMSFHQCGGNVGDVV IPIP+WV ++G T+PDIFYTNR G RN EYLT+GVD +PLF GRTA+++Y+DYM SFR+NM  FL+AG I+DIEVGLGPAGE+RYPSYP+SQGWVFPGIGEF CYDKYL+A+FK AA  +GHPEWELPD+AG YND PE T+FFK NGTYL+E+  F
Sbjct:   31 DEIRAQLKKLTEAGVDGVMIDVWWGLVEGKGPKAYDWSAYKQVFDLVHEAGLKLQAIMSFHQCGGNVGDVVNIPIPQWVRDVGATDPDIFYTNRGGTRNIEYLTLGVDDQPLFHGRTAVQMYADYMASFRENMKKFLDAGTIVDIEVGLGPAGEMRYPSYPQSQGWVFPGIGEFICYDKYLEADFKAAAAKAGHPEWELPDDAGEYNDTPEKTQFFKDNGTYLTEKGKF 259          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.292e-98
Identity = 158/229 (69.00%), Postives = 196/229 (85.59%), Query Frame = 1
Query:    1 EKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            ++  +QLK+L  AG DG+M+DVWWG++E K P  YDWSAYR +F+L+Q+  LKLQAIMS HQCGGNVGDVV IPIP+WV ++G++NPDIFYTNRSG  N EYLT+GVD +PLF GRTAI++Y+DYMKSFR+NM DFL+AGV++DIEVGLGPAGE+RYPSYP+SQGWVFPG+GEF CYDKYL+A+FK AA  +GHPEW+L D+AGTYND PE T+FF  NGTY +++  F
Sbjct:   31 DETRAQLKKLTEAGADGVMIDVWWGLVEGKEPGVYDWSAYRQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVNIPIPQWVRDVGKSNPDIFYTNRSGLTNIEYLTLGVDDQPLFHGRTAIQLYADYMKSFRENMADFLDAGVVVDIEVGLGPAGEMRYPSYPQSQGWVFPGVGEFICYDKYLQADFKAAAEEAGHPEWDLLDDAGTYNDTPEKTQFFADNGTYQTDKGKF 259          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.292e-98
Identity = 158/229 (69.00%), Postives = 195/229 (85.15%), Query Frame = 1
Query:    1 EKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            ++L +QL++L  AGVDG+MVDVWWG++E KGP+ YDWSAY+ LFEL+Q+  LKLQAIMSFHQCGGNVGD V IPIP+WV ++G  +PDIFYT+  G RN EYLT+GVD++PLF GR+A+++Y+DYM SFR+NM DFL+AGVI+DIEVGLGPAGE+RYPSYP+S GW FPGIGEF CYDKYL+A+FK AA A GHPEWE P++ G YND PE T+FF+ NGTYLSE+  F
Sbjct:   31 DELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDVGQYNDTPERTQFFRDNGTYLSEKGRF 259          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.179e-97
Identity = 157/229 (68.56%), Postives = 196/229 (85.59%), Query Frame = 1
Query:    1 EKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            ++L +QL++L  AGVDG+MVDVWWG++E KGP+ YDWSAY+ LFEL+Q+  LKLQAIMSFHQCGGNVGD V IPIP+WV ++G  +PDIFYT+  G RN EYLT+GVD++PLF GR+A+++Y+DYM SFR+NM +FL+AGVI+DIEVGLGPAGE+RYPSYP+S GW FPGIGEF CYDKYL+A+FK AA A GHPEWE P++AG YND PE T+FF+ NGTYL+E+  F
Sbjct:   31 DELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDAGQYNDTPERTQFFRDNGTYLTEKGRF 259          
BLAST of FC921599 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 354.755 bits (909), Expect = 2.627e-97
Identity = 158/230 (68.70%), Postives = 198/230 (86.09%), Query Frame = 1
Query:    1 EKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELP-DNAGTYNDXPESTEFFKTNGTYLSEQEIF 687
            EK+E +LK++KA G DG+MVDVWWGIIE+KGP+QYDWSAYR LF+L+++  LK+QAIMSFHQCGGNVGD V IPIP+W+L+IG+ NPDIFYTNR+GNRN+EYL++GVD++ LF GRTA+E+Y D+M+SFR NM DFL+AG I+DIEVG G AGELRYPSYPE+QGWVFPGIGEFQCYDKY+ A++KEA   +G+ +WE+P   AGTYND P+ TEFF+ NGTY ++   F
Sbjct:   35 EKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGTYNDTPDKTEFFRPNGTYKTDMGKF 264          
The following BLAST results are available for this feature:
BLAST of FC921599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMYB_VIGUN5.451e-11180.35Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_TRIRP2.706e-11079.74Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA2.144e-10777.97Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_SOYBN3.657e-10777.97Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_ARATH1.217e-10273.04Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_WHEAT2.998e-10170.31Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE5.292e-9869.00Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_HORVU5.292e-9869.00Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP1.179e-9768.56Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_IPOBA2.627e-9768.70Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionC32107B11EF RVDevelopN Citrus clementina cDNA clone C32107B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921599 ID=FC921599; Name=FC921599; organism=Citrus clementina; type=EST; length=696bp
GAAAAGCTGGAGTCACAGCTCAAGGAGCTAAAAGCTGCAGGTGTTGATGG
GATTATGGTGGATGTATGGTGGGGGATTATAGAATCCAAGGGCCCTAGGC
AGTATGATTGGAGTGCTTACAGGAGCTTGTTTGAACTCATTCAACAATAT
GAACTGAAGTTACAAGCTATAATGTCATTCCACCAATGTGGTGGAAATGT
TGGAGATGTCGTTACCATCCCAATTCCCAAATGGGTGCTTGAAATCGGAG
AAACAAACCCCGATATCTTTTACACAAATCGTTCGGGTAACAGGAACAAG
GAGTACCTCACAATTGGCGTTGATCACAAGCCTCTCTTTGATGGAAGAAC
TGCCATTGAGATTTATAGTGACTACATGAAAAGCTTCAGGAAGAATATGT
TTGATTTTCTAGAAGCAGGAGTGATAATAGACATTGAAGTAGGACTTGGT
CCTGCAGGGGAGCTAAGGTACCCCTCTTATCCGGAAAGTCAAGGGTGGGT
TTTTCCAGGGATAGGTGAATTCCAGTGCTACGACAAATATCTCAAAGCGG
AATTCAAGGAGGCAGCAACAGCTTCAGGGCACCCTGAATGGGAATTACCT
GATAATGCAGGAACATACAATGACNAACCGGAATCTACTGAGTTCTTTAA
GACAAATGGAACATACCTTAGCGAACAGGAAATTTTTTCTTGACTT
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