FC921602

Overview
NameFC921602
Unique NameFC921602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921602_ssr69 microsatellite FC921602_ssr69:69..101. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15438 contig Ccv1_Contig15438:31..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184A_MOUSE (Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 621
            SG+ V   +  T   +  HL  +  P+EQ+       + PIYA DS++ LL + G  P++ + DSV++CYEA VI  F+ L + YL     ++ +  EI+G+ I  S        R +      L+  K  T QF +++P+ +++ I LQ    Y
Sbjct:   62 SGVFVWTALLLTGHQIYSHLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKY 212          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184A_RAT (Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 621
            SG+ V   +  T   +  HL  +  P+EQ+       + PIYA DS++ LL + G  P++ + DSV++CYEA VI  F+ L + YL     ++ +  EI+G+ I  S        R +      L+  K  T QF +++P+ +++ I LQ    Y
Sbjct:   62 SGVFVWTALLLTGHQIYSHLRSYTVPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKY 212          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184C_MOUSE (Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 51/172 (29.65%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTIIL 657
            +G+ ++LT+  ++  + QHL ++  P+ QK       M PIY+VDS+V L+  K       ++D+ +ECYEA VI  FM  + +YL I     I+  E K ++ +H  P+    P    +    L   K    Q+ V+RPI ++  +  ++L +Y         +WT+ +IL
Sbjct:   52 AGIFLLLTIPVSLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWVALVYPK----IAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLILHLEAKDQQ-NHILPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTALVCEILDVYDEGNFGFSNAWTYLVIL 216          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 48/155 (30.97%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 621
            SG+ V   +  T   +  HL  +  P+EQ+      L+ PIYA DS++ LL + G   ++ + DSV++CYEA VI  F++L + YL     +  +  EI+G+ I  S        R +      L+  K  T QF +++P+ ++  I LQ    Y
Sbjct:   59 SGIFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLL-LLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLG---GEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKY 209          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184C_BOVIN (Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTIIL 657
            +G+ ++LT+  ++ ++ QHL ++  P+ QK       M PIY++DS++ L           ++D+ +ECYEA VI  FM  + +YL       ++  E K ++ H   P+    P T  +    L   K    Q+ V+RP  +I+ +  +LL IY         +WT+ +I+
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPSIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLIIEAKDQQKHFP-PLCCCPPWT--MGEVLLFRCKLGVLQYTVVRPFTTIIALVCELLDIYDEGNFSFSNAWTYLVII 216          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184C_RAT (Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 50/172 (29.07%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTIIL 657
            +G+ ++LT+  +M  + QHL ++  P+ QK       M PIY++DS+V L   K       ++D+ +ECYEA VI  FM  + +YL I     ++  E K ++ +H  P+    P    +    L   K    Q+ V+RPI ++  +  ++L +Y         +WT+ +IL
Sbjct:   52 AGIFLLLTIPVSMCGILQHLVHYTQPELQKPIIRILWMVPIYSLDSWVALKYPK----IAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLMLHLEAKDQQ-NHLPPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTSLVCEILGVYDEGNFSFSNAWTYLVIL 216          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184A_BOVIN (Transmembrane protein 184A OS=Bos taurus GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 621
            SG+ V   +  T   +  HL  +  P EQ+       + P+YA DS++ LL + G    + + DSV++CYEA VI  F++L + YL     ++ +  EI+G+ +  S        R +      L+  K  T QF +++PI +++ I LQ    Y
Sbjct:   49 SGVFVWAALVLTGHQIYLHLRSYTVPHEQRYIIRLLFIVPVYAFDSWLSLL-LLGGHQHYIYFDSVRDCYEAFVIYSFLSLCFQYLG---GESAIMAEIRGKPVRTSCFHGTCCLRGMTYSIGFLRFCKQATLQFCIVKPIMALVTIVLQAFGKY 199          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184B_HUMAN (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHS--FPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 621
            SG  V   +  T   +  HL  +  P EQ+       + PIYA DS++ LL     + ++ +  +V++CYEALVI  F++L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ    Y
Sbjct:   50 SGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKY 200          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184B_BOVIN (Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHS--FPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 621
            SG  V   +  T   +  HL  +  P EQ+       + PIYA DS++ LL     + ++ +  +V++CYEALVI  F++L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ    Y
Sbjct:   50 SGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKY 200          
BLAST of FC921602 vs. ExPASy Swiss-Prot
Match: T184B_MOUSE (Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 1
Query:  157 SGLCVMLTMHFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREIHHS--FPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 621
            SG  V   +  T   +  HL  +  P EQ+       + PIYA DS++ LL     + ++ +  +V++CYEA VI  F++L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ    Y
Sbjct:   50 SGFFVWTALLITCHQIYMHLRCYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEAFVIYNFLSLCYEYLG---GESAIMSEIRGKAIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVILQAFGKY 200          
The following BLAST results are available for this feature:
BLAST of FC921602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
T184A_MOUSE1.535e-1430.97Transmembrane protein 184A OS=Mus musculus GN=Tmem... [more]
T184A_RAT2.005e-1430.97Transmembrane protein 184A OS=Rattus norvegicus GN... [more]
T184C_MOUSE1.697e-1329.65Transmembrane protein 184C OS=Mus musculus GN=Tmem... [more]
T184A_HUMAN1.697e-1330.97Transmembrane protein 184A OS=Homo sapiens GN=TMEM... [more]
T184C_BOVIN1.876e-1227.91Transmembrane protein 184C OS=Bos taurus GN=TMEM18... [more]
T184C_RAT2.451e-1229.07Transmembrane protein 184C OS=Rattus norvegicus GN... [more]
T184A_BOVIN4.180e-1229.68Transmembrane protein 184A OS=Bos taurus GN=TMEM18... [more]
T184B_HUMAN7.130e-1229.30Transmembrane protein 184B OS=Homo sapiens GN=TMEM... [more]
T184B_BOVIN7.130e-1229.30Transmembrane protein 184B OS=Bos taurus GN=TMEM18... [more]
T184B_MOUSE9.312e-1228.66Transmembrane protein 184B OS=Mus musculus GN=Tmem... [more]

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Properties
Property NameValue
Genbank descriptionC32107C02EF RVDevelopN Citrus clementina cDNA clone C32107C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921602 ID=FC921602; Name=FC921602; organism=Citrus clementina; type=EST; length=677bp
GAATCAGACAATCAATCACAAATACAAAGACGCAGATACAAGAGTCAGTC
ACGAGAGACACAGTTTGAATCATCATCATCATCATCATCATCATCATCAT
CGCGGTGAGCGATGGATCTGAGCACGATGAGTCGGGCGCAAATCACATTG
ATGGGATCGGGATTGTGCGTGATGCTGACAATGCATTTCACGATGCGGCT
CTTGCAACAGCATCTCTTTTACTGGAAGAATCCGAAGGAGCAGAAGGCTA
TCATTATCATAATCCTTATGGCTCCCATTTACGCTGTTGATTCTTTCGTA
GGTTTGTTGGATATCAAGGGTAGCAAACCCTTCTTCACCTTTTTGGACTC
CGTCAAGGAATGCTATGAGGCTCTGGTTATTGCTAAGTTTATGGCTTTAA
TGTACAGTTATTTGAAGATTTCGATTAGTAAGAACATTGTGCCGGATGAA
ATTAAAGGAAGAGAGATTCATCATTCCTTTCCCATGACTCTTTTCCAGCC
ACGCACTGTCCGCCTGGATCACCATACATTGAAGCTCCTCAAATACTGGA
CGTGGCAGTTTGTTGTTATCCGCCCAATATGTTCCATATTGATGATTACA
CTGCAACTTCTTCGGATATATCCCTCTTGGTTGAGCTGGACATTTACAAT
CATTCTAACGTTTCAGTTTCATTGGCA
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