FC921605

Overview
NameFC921605
Unique NameFC921605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921605_ssr49 microsatellite FC921605_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
FC921605_ssr61 microsatellite FC921605_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14351 contig Ccv1_Contig14351:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921605 vs. ExPASy Swiss-Prot
Match: RRP44_MOUSE (Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28
Identity = 74/193 (38.34%), Postives = 110/193 (56.99%), Query Frame = 3
Query:  162 MLKSKSYSRKTKSNKIKKEVREVYLRDDIWXXXXXXXXXXXXXX--------RLSASTI------LVVDTNVVLNQIDLLENPAIXXXXXXXXXXXXXKNKNLSVYNRIRALCSNSLRNFYVFSNTFHKDTHVDKMDKESPNDLNDRAIRVATQWYQKHL-----GDATKVLLVTNDRENMRKATETGIFAET 683
            ML+SK++ +KT++  + K VRE YLRDDI                       R  AS++      L+ DTNV+L+QID+LE+PAI             +N++  +Y RIR + +N  ++FY F+N  HK+T++++   E+ ND NDRAIRVA +WY +HL         +V+L+TNDR+N  KA + GI A T
Sbjct:    1 MLRSKTFLKKTRAGGVVKIVREHYLRDDIGCGAPACSACGGAHAGPALELQPRDQASSLCPWPHYLLPDTNVLLHQIDVLEHPAIRNVIVLQTVMQEVRNRSAPIYKRIRDVTNNQEKHFYTFTNEHHKETYIEQEQGENANDRNDRAIRVAAKWYNEHLKRVAADSQLQVILITNDRKNKEKAVQEGIPAFT 193          
BLAST of FC921605 vs. ExPASy Swiss-Prot
Match: RRP44_HUMAN (Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 75/193 (38.86%), Postives = 109/193 (56.48%), Query Frame = 3
Query:  162 MLKSKSYSRKTKSNKIKKEVREVYLRDDIWXXXXXXXXXXXXXXRLS--------ASTI------LVVDTNVVLNQIDLLENPAIXXXXXXXXXXXXXKNKNLSVYNRIRALCSNSLRNFYVFSNTFHKDTHVDKMDKESPNDLNDRAIRVATQWYQKHL-----GDATKVLLVTNDRENMRKATETGIFAET 683
            MLKSK++ +KT++  + K VRE YLRDDI                 +        AS++      L+ DTNV+L+QID+LE+PAI             +N++  VY RIR + +N  ++FY F+N  H++T+V++   E+ ND NDRAIRVA +WY +HL      +  +V+ +TNDR N  KA E GI A T
Sbjct:    1 MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAACGGAHEGPALEPQPQDPASSVCPQPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEHHRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSADNQLQVIFITNDRRNKEKAIEEGIPAFT 193          
BLAST of FC921605 vs. ExPASy Swiss-Prot
Match: DIS3_SCHPO (Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe GN=dis3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 63/194 (32.47%), Postives = 93/194 (47.94%), Query Frame = 3
Query:  168 KSKSYSRKTKSNKIKKEVREVYLRDDIWXXXXXXXXXXXXXXRLSASTIL-------------------VVDTNVVLNQIDLLENPA-IXXXXXXXXXXXXXKNKNLSVYNRIRALCSNSLRNFYVFSNTFHKDTHVDKMDKESPNDLNDRAIRVATQWYQKHLGD-ATKVLLVTNDRENMRKATETGIFAETM 686
            + + + R T+  K++K VRE YLR+DI               + S   +L                   + D+N+  + ID LE+P                 +K++ +YNR++ LC    + F  FSN F  DT V+++D ES ND NDRAIR A  W+  HL     K++L+T+DREN R A E GI   T+
Sbjct:   18 RDRVFVRATRG-KVQKVVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVLEPILSEKPMFLEKFGHHYLIPDSNIFYHCIDALEHPNNFFDVIILQTVFSEISSKSIPLYNRMKRLCQEKTKRFTPFSNEFFVDTFVERLDDESANDRNDRAIRNAASWFASHLASLGIKIVLLTDDRENARLAAEQGIQVSTL 210          
BLAST of FC921605 vs. ExPASy Swiss-Prot
Match: RRP44_YEAST (Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae GN=DIS3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.983e-18
Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  315 LVVDTNVVLNQIDLLENP-AIXXXXXXXXXXXXXKNKNLSVYNRIRALC--SNSLRNFYVFSNTFHKDTHVDKMDKESPNDLNDRAIRVATQWYQKHLGD-ATKVLLVTNDRENMRKATE 662
            +V+DTNVVL  IDLLENP                +NK+  VY R+R LC  S+  + F VF N F + T V+++  E+ ND NDRAIR   QWY +HL      V+LVTNDR N   AT+
Sbjct:   88 VVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATK 207          
The following BLAST results are available for this feature:
BLAST of FC921605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RRP44_MOUSE2.192e-2838.34Exosome complex exonuclease RRP44 OS=Mus musculus ... [more]
RRP44_HUMAN4.883e-2838.86Exosome complex exonuclease RRP44 OS=Homo sapiens ... [more]
DIS3_SCHPO1.090e-1932.47Exosome complex exonuclease dis3 OS=Schizosaccharo... [more]
RRP44_YEAST5.983e-1845.00Exosome complex exonuclease DIS3 OS=Saccharomyces ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32107C05EF RVDevelopN Citrus clementina cDNA clone C32107C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921605 ID=FC921605; Name=FC921605; organism=Citrus clementina; type=EST; length=740bp
GGTCTTCACATCAGAGGCTCACAGTTACAGTGGCGGCAGCGACGCATTAT
AAATAAATAAATTAATTAATTAAAAAAATAAGAAAAGGAAGAAAGGTTCT
GCAAACTACTGAAGGCTGAGGCACATCAGGCATCTTAATTGGATTCAGAG
GAGAGGCAAACATGTTAAAGAGCAAATCATACAGTAGGAAGACCAAAAGT
AATAAAATTAAAAAGGAAGTAAGAGAAGTCTATCTCCGAGATGACATTTG
GTGCGGTGCTGCTTCTTGCTCAACCTGCGACTCCTCCGCCGCTCGCTTGT
CCGCTTCCACGATTCTTGTCGTCGACACTAACGTCGTCCTTAATCAGATT
GATTTGCTGGAGAATCCCGCGATTGATGACGTGGTGGTGCTGTCTGTGGT
GTTGGATGAAGTTAAGAACAAGAACTTATCGGTTTACAATAGAATTAGAG
CTCTTTGCAGTAATTCTTTGAGAAATTTCTATGTTTTCTCAAATACATTT
CACAAGGATACACATGTAGATAAGATGGATAAAGAAAGTCCTAATGATTT
GAATGATAGAGCAATTCGGGTGGCAACTCAGTGGTACCAGAAGCATCTTG
GTGATGCAACAAAGGTTTTACTTGTGACTAATGATAGGGAAAATATGAGG
AAGGCTACTGAAACAGGCATATTCGCTGAGACAATGAGTCGTATGTGAAG
TCATTGGGTCACCCATTTTTGCTGACTGCTGTCATCTGCA
back to top