FC921613

Overview
NameFC921613
Unique NameFC921613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14352 contig Ccv1_Contig14352:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.035e-35
Identity = 79/179 (44.13%), Postives = 104/179 (58.10%), Query Frame = 2
Query:   98 SSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKXXXXXXXXXXXXXXX--RFRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDH 628
            SS ++ +RP ADF P++WG+ FL      + IDA T+++H  LK+EVR+MI        QKL  ID+VQRLGV+YHF KEIEDEL                   RFRL R+ G  +SC               S+ +D++G+L LY+A+YL + GEDILDEAI FTT HL   +S  DH
Sbjct:   15 SSNKDEIRPKADFQPSIWGDFFLNCPD--KNIDAGTEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVQGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVSSLDH 191          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.491e-34
Identity = 79/179 (44.13%), Postives = 104/179 (58.10%), Query Frame = 2
Query:   98 SSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKXXXXXXXXXXXXXXX--RFRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDH 628
            SS ++ +RP ADF P++WG+ FL      + IDA T+++H  LK+EVR+MI        QKL  ID+VQRLGV+YHF KEIEDEL                   RFRL R+ G  +SC               S+ +D+RG+L LY+A+YL + GEDILDEAI FTT HL   ++  DH
Sbjct:   15 SSNKDEMRPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDH 191          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.016e-33
Identity = 78/179 (43.58%), Postives = 104/179 (58.10%), Query Frame = 2
Query:   98 SSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKXXXXXXXXXXXXXXX--RFRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDH 628
            SS ++ +RP ADF P++WG+ FL      + IDA T+++H  LK+EVR+MI        QKL  ID+VQRLGV+YHF KEIEDEL                   RFRL R+ G  +SC               S+ +D+RG+L LY+A+YL + GEDILDEAI FTT HL   ++  D+
Sbjct:   15 SSNKDEMRPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSLRFRLLREHGFNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVASLDY 191          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33
Identity = 77/179 (43.02%), Postives = 102/179 (56.98%), Query Frame = 2
Query:   98 SSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKXXXXXXXXXXXXXXX--RFRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDH 628
            SS ++ +RP ADF P++WG+ FL      + IDA TQ++H  LK+EVR+MI         KL  ID+VQ LGV+YHF KEIEDEL                   RFRL R+ G  +SC               S+ +D+RG+L LY+A+YL + GEDILDEAI FT+ HL   ++  DH
Sbjct:   15 SSNKDEMRPKADFQPSIWGDFFLNCPD--KNIDAETQKRHQQLKEEVRKMIVAPMANSTLKLAFIDSVQGLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSLRFRLLREHGFHVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTSNHLSLAVASLDH 191          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.118e-31
Identity = 82/194 (42.27%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   59 MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGK----XXXXXXXXXXXXXXXRFRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDH 628
            M   +  +LA+   +     RP ADFHP +WG+ F+    D + IDAAT+ Q+  LK +VR+MI    +   QKL  IDAVQRLGV+YHFEKEIEDEL                     RFRL R+ G  ISC               SL +D++G+L LYEA+Y+ + GEDILDEAI FTT  L   +    H
Sbjct:    1 MASQASQVLASPHPAISSENRPKADFHPGIWGDMFI-ICPDTD-IDAATELQYEELKAQVRKMIMEPVDDSNQKLPFIDAVQRLGVSYHFEKEIEDELENIYRDTNNNDADTDLYTTALRFRLLREHGFDISCDAFNKFKDEAGNFKASLTSDVQGLLELYEASYMRVHGEDILDEAISFTTAQLTLALPTLHH 192          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 75/198 (37.88%), Postives = 112/198 (56.57%), Query Frame = 2
Query:   86 AAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGK-XXXXXXXXXXXXXXXRFRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDHSHVNSNLAEQYVISLQ 676
            AAV++  EE VRP+ADF P+LWG+ FL  +   +  +   +E  A LK++ R M+  T  KLA  L++ID ++RLG++YHFEKEI+D L +                +FRL RQ G  IS               ESL +D+ G+L+LYEA+++    +DIL++A+ F+T HL+S        H+ S L EQ   +L+
Sbjct:    4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEA-LKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA-----PHLKSPLREQVTHALE 195          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 67/186 (36.02%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   77 PLLAAVSSSTEETVRPIADFHPTLWGNHFLK---SAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKXXXXXXXXXXXXXXXR------FRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKS 607
            P  A +SS+T + VRP+A F PT+WGN F     + ++ E+ D    E+   LK++V+ ++ ++ +   + + +ID + RLGV+YHFE +IE+ L K                      FR+FRQ G K+S               ESL  D +GMLSL+EA++L++ GEDIL+EA  FT  +L+S
Sbjct:   50 PTQACLSSTTHQEVRPLAYFPPTVWGNRFASLTFNPSEFESYD----ERVIVLKKKVKDILISSTSDSVETVILIDLLCRLGVSYHFENDIEELLSKIFNSQPDLVDEKECDLYTAAIVFRVFRQHGFKMSSDVFSKFKDSDGKFKESLRGDAKGMLSLFEASHLSVHGEDILEEAFAFTKDYLQS 231          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 60/174 (34.48%), Postives = 92/174 (52.87%), Query Frame = 2
Query:   92 VSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMITTTAN---KLAQKLHMIDAVQRLGVAYHFEKEIEDELGKXXXXXXXXXXXXXXXR-FRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHL 601
            +S + E+ +RPIA+F P++WG+ FL     VE      ++    LK+EVR+++    +   K A  L +ID +QRLG+ YHFE+EI+  L                   FRL R+QG  ++C              +SL ND+ G+L LYEA  + + GE IL++A+ FT + L
Sbjct:    1 MSLTEEKPIRPIANFPPSIWGDQFLIYEKQVEQ---GVEQIVNDLKKEVRQLLKEALDIPMKHANLLKLIDEIQRLGIPYHFEREIDHALQCIYETYGDNWNGDRSSLWFRLMRKQGYYVTCDVFNNYKDKNGAFKQSLANDVEGLLELYEATSMRVPGEIILEDALGFTRSRL 171          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 62/182 (34.07%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  110 ETVRPIADFHPTLWGN---HFLKSAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKXXXXXXXXXXXXXXXR--------FRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISIS 622
            E  RP+ADF   +W +    F KS    ET     +E+H+ LK+ V+    ++     + +  IDA+ RLGV+YHFEK+I ++L K                        F++FRQ G K+S                 L+ D  GMLSLYEAA     GEDI+DEA+ F+ +HL+ + S S
Sbjct:    4 EVNRPLADFPANIWEDPLTSFSKSDLGTETF----KEKHSTLKEAVKEAFMSSKANPIENIKFIDALCRLGVSYHFEKDIVEQLDKSFDCLDFPQMVRQEGCDLYTVGIIFQVFRQFGFKLSADVFEKFKDENGKFKGHLVTDAYGMLSLYEAAQWGTHGEDIIDEALAFSRSHLEEISSRS 181          
BLAST of FC921613 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 64/206 (31.07%), Postives = 102/206 (49.51%), Query Frame = 2
Query:   80 LLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELG------KXXXXXXXXXXXXXXXRFRLFRQQGVKISCXXXXXXXXXXXXXXESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDHSHVNSNLAEQYVISLQF 679
            ++A   S++ + +R  A++ P++W + +++S   +E +      Q   LK++VR M+    N L Q L +I+ +QRLG++YHFE+EI+  L                       +FRL RQ G  +S                 L  D +GMLSLYEA++  I GE+IL+EA  F+T HL+  +      +   NLA     SL+F
Sbjct:   44 MVANKVSTSPDILRRSANYQPSIWNHDYIESLR-IEYVGETCTRQINVLKEQVRMMLHKVVNPLEQ-LELIEILQRLGLSYHFEEEIKRILDGVYNNDHGGDTWKAENLYATALKFRLLRQHGYSVSQEVFNSFKDERGSFKACLCEDTKGMLSLYEASFFLIEGENILEEARDFSTKHLEEYVK----QNKEKNLATLVNHSLEF 243          
The following BLAST results are available for this feature:
BLAST of FC921613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DCS4_GOSAR7.035e-3544.13(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
DCS1_GOSAR3.491e-3444.13(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS2_GOSAR1.016e-3343.58(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
DCS1_GOSHI8.600e-3343.02(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
DCS3_GOSAR2.118e-3142.27(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
5EAS_TOBAC1.518e-2937.88Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
CASS_RICCO5.587e-2436.02Casbene synthase, chloroplastic OS=Ricinus communi... [more]
AMS1_ARTAN1.090e-1934.48Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]
HUMS_ARATH4.143e-1934.07Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
MYRS_QUEIL9.231e-1931.07Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]

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Properties
Property NameValue
Genbank descriptionC32107D01EF RVDevelopN Citrus clementina cDNA clone C32107D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921613 ID=FC921613; Name=FC921613; organism=Citrus clementina; type=EST; length=739bp
GGCAACTCCTATTCTTAAAAACACACTATATAGTTGTATTTGGTTTGTCT
GAAACGGAATGAAAGATATGTCTATTCCACTTCTAGCAGCAGTTTCCAGT
TCAACTGAAGAAACTGTTCGTCCCATTGCAGATTTTCATCCTACTTTATG
GGGAAACCATTTCCTGAAATCCGCTGCCGATGTCGAGACAATTGACGCTG
CAACTCAAGAACAGCACGCAGCACTGAAGCAAGAGGTCAGGAGGATGATA
ACCACTACTGCCAATAAGCTTGCCCAAAAACTACACATGATTGATGCAGT
ACAACGATTAGGTGTCGCTTATCATTTTGAAAAAGAGATTGAAGATGAAT
TGGGAAAGGTATCTCATGATCTTGACAGTGATGATCTATACGTTGTTTCT
CTTCGTTTTCGACTTTTTAGACAGCAAGGAGTTAAGATTTCATGTGATGT
GTTTGATAAGTTCAAAGATGATGAAGGTAAATTCAAGGAATCATTGATCA
ACGATATACGAGGCATGTTGAGTTTGTACGAGGCAGCATACCTAGCAATT
CGGGGGGAAGACATTTTAGATGAAGCCATTGTTTTCACTACCACTCACCT
TAAGTCAGTAATATCTATATCTGATCATTCTCATGTAAACTCTAATCTTG
CTGAACAATACGTCATTTCTCTGCAATTCTCTCCGTAAGCCGCAGCAGGT
TAGAGGCAGGTATTTTTGGATTTTATCAAGGATGATTGC
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