FC921619

Overview
NameFC921619
Unique NameFC921619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921619 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.438e-22
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 2
Query:    2 ADQNISISTYSGAGMALTSAAVKKGGLSAGDVAAHYKYKNVLFHVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCID 319
            +D+  +ISTYS  G+A+TS+  KKG L  GDV    K KN+   +KVDT SN+ TT T+ E  P  KAI S KVP+  SGK+E+QY H++A  +S++ L  +P ++
Sbjct:   25 SDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVN 130          
BLAST of FC921619 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.696e-21
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    2 ADQNISISTYSGAGMALTSAAVKKGGLSAGDVAAHYKYKNVLFHVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCID 319
            +D   SI+TYS  G+ +TS+  KKG L   DV    K KNV   +KVDT SN+ TT T+ E  P  K I S +VPD  SGKLEVQY HD+A   +++ L  +P ++
Sbjct:   25 SDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVN 130          
BLAST of FC921619 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 7.844e-21
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 2
Query:    5 DQNISISTYSGAGMALTSAAVKKGGLSAGDVAAHYKYKNVLFHVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCID 319
            DQ  S++TYS  G+A+T+    KG L  GDVA   K  N    VKV T+S++LTT T  E  P  K I   K+PD+ SGK EVQYFHD+A  ++++    +P ++
Sbjct:   26 DQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVN 130          
BLAST of FC921619 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 7.844e-21
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 2
Query:    2 ADQNISISTYSGAGMALTSAAVKKGGLSAGDVAAHYKYKNVLFHVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCID 319
            +DQ  SI+T+S AG+A+TS   KKG L  GDVA   + KN+   +KV T+S  L T T+ E  P  ++I S KVPD NSGK+E+QY H++A  ++++ L Q+P ++
Sbjct:   25 SDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVN 130          
BLAST of FC921619 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.893e-20
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 2
Query:    2 ADQNISISTYSGAGMALTSAAVKKGGLSAGDVAAHYKYKNVLFHVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCID 319
            +D   +++TYS  G+A+T++ +KKG L   DV+   K KN+   VKVDT SN+ TT T+ E  P  K I S  VPD  SGK+E+QY H++A   ++I L  SP ++
Sbjct:   25 SDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVN 130          
BLAST of FC921619 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.588e-19
Identity = 41/105 (39.05%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    5 DQNISISTYSGAGMALTSAAVKKGGLSAGDVAAHYKYKNVLFHVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCID 319
            D   +++TY+  G+A+T+ + KK  L  G++ +  K KN+   VK +++SN++TT T+ E+ P  K+I S  VPD  SGK E+QY HD+A  +++I L  SP ++
Sbjct:   25 DHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVN 129          
BLAST of FC921619 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.974e-17
Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    5 DQNISISTYSGAGMALTSAAVKKGGLSAGDVAAHYKYKNVLFHVKVDTESNILTTFTLTEI-LPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCID 319
            D   +++TY+  G A+T+ + KK  L+ G++ +  K KN+   VK ++ SN++TT T  ++  P  K I S  VPD  SGK+E+QY HD+A   ++I L  +P ++
Sbjct:   25 DHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVN 130          
BLAST of FC921619 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.444e-14
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 2
Query:    8 QNISISTYSGAGMALTSAAVKKGGLSAGDVAAHYKYKNVLFHVKVDTESNILTTFTLTEI-LPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCID 319
            Q   ++T S  G+A+T+A  +K     G++    K K +   VK ++ES++LTT T+ E   P  K+I +L VPD  SGKLE QY H++A   +++ LN +P ++
Sbjct:   27 QKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVN 131          
The following BLAST results are available for this feature:
BLAST of FC921619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC_PEA2.438e-2246.23Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_SOLTU2.696e-2146.23Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_ARATH7.844e-2143.81Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ARATH7.844e-2145.28Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_SOLTU3.893e-2043.40Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_ORYSJ9.588e-1939.05Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT8.974e-1736.79Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE5.444e-1437.14Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionC32107D07EF RVDevelopN Citrus clementina cDNA clone C32107D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921619 ID=FC921619; Name=FC921619; organism=Citrus clementina; type=EST; length=321bp
CGCCGATCAGAATATCAGTATCTCCACTTACAGCGGTGCCGGAATGGCTC
TCACATCAGCTGCTGTGAAAAAGGGAGGACTCTCTGCTGGTGATGTTGCT
GCCCACTACAAGTATAAGAATGTTTTATTCCATGTCAAAGTGGACACAGA
GTCTAATATTTTGACCACCTTCACTCTTACTGAGATCCTTCCATCAACAA
AGGCTATTGCTTCCTTGAAAGTGCCTGATTATAACTCTGGCAAGTTGGAG
GTTCAGTACTTCCATGATCATGCCACCTTTACTTCAGCCATTGCTTTGAA
TCAATCCCCCTGCATTGATGT
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