FC921624

Overview
NameFC921624
Unique NameFC921624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921624 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.157e-58
Identity = 105/157 (66.88%), Postives = 130/157 (82.80%), Query Frame = 2
Query:  155 SVEARTGRLRQRYDNNFRLVSGCIPYRLTKDAEDENE--DIQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSK--QDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWM 613
            ++ ARTGR  QRYDNNFRLVSGCIPYRL KD E+++   D + +++VLM+SSPNR DLVFPKGGWE+DETV+EAA REA+EEAGV+G L E PLG+WEFRSKS   +    L GGC+GYMF+LEV EEL IWPEQ++R R+WLN+++A +LCRYEWM
Sbjct:    3 NLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWM 159          
BLAST of FC921624 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.694e-57
Identity = 105/155 (67.74%), Postives = 125/155 (80.65%), Query Frame = 2
Query:  158 VEARTGRLRQRYDNNFRLVSGCIPYRLTKDAEDENE---DIQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWM 613
            + +RTGR RQRYDNNFRLVSGCIPYRL K  E E +   D   ++EVLMVSSPNR DLVFPKGGWE+DETV+EAA REA+EEAGV+G L E PLG+WEFRSKS        GGC+GYMF+L+VTEELE WPE++NR R+WL +++A +LCRYEWM
Sbjct:    4 LSSRTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWM 158          
BLAST of FC921624 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.454e-42
Identity = 86/150 (57.33%), Postives = 108/150 (72.00%), Query Frame = 2
Query:  164 ARTGRLRQRYDNNFRLVSGCIPYRLTKDAEDENEDIQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWM 613
            ARTGRL+QRY++  RLV+GCIP+R     +D N +    I+VLM+SS +   L+FPKGGWENDETV EAA REA+EEAGVRG L +  LG +EF+SKS QD  S EG C+  M++L V EEL  WPE E R RKWL I++A + CR+ WM
Sbjct:    6 ARTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGILMDF-LGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWM 154          
BLAST of FC921624 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 72/156 (46.15%), Postives = 105/156 (67.31%), Query Frame = 2
Query:  152 MSVEARTGRLRQRYDN-NFRLVSGCIPYRLTKDAEDENEDIQTR-IEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWM 613
            +S+ +RTGR  QRYD+  +R V GC+PYR  K    E   ++T+ I+VL+VS+     ++FPKGGWE DE++ EAA RE +EEAGV G+L EK LG W+++SK    +H       GYMF+L V++E E WPE E R R+W+++ +A ++C+  WM
Sbjct:   41 VSLVSRTGRDLQRYDHAGYRQVVGCVPYRYKKQ---EVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELEEK-LGKWQYKSKRHSIIHD------GYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWM 186          
BLAST of FC921624 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.657e-31
Identity = 74/150 (49.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  164 ARTGRLRQRYDNNFRLVSGCIPYRLTKDAEDENEDIQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWM 613
            +RTGR  QRY+   R V GCIPYRL   ++    D     EVL++SS     L+FPKGGWE DE+V EAA RE+LEEAGV G + E+ LG W+F SKSK   +       G+MF + V EELE+WPEQ  R R W+ + +A   CR  WM
Sbjct:    6 SRTGRQSQRYNKGRRQVVGCIPYRLKISSDGTISD---EFEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNV-ERQLGKWDFLSKSKGTFY------EGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWM 145          
BLAST of FC921624 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.150e-30
Identity = 72/150 (48.00%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  164 ARTGRLRQRYDNNFRLVSGCIPYRLTKDAEDENEDIQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWM 613
            +RTGR  QRY+   R V GC+PYR     + +  D    +EVL++SS     L+FPKGGWE DE+V EAA RE LEEAGV G + E  LG W+F SKS+   +       G MF + VTE+LE+WPEQ  R R W+N+ +A + CR  WM
Sbjct:   11 SRTGRQFQRYNKGRRQVVGCVPYRFKLSNDGKISD---EVEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNV-EHQLGKWDFLSKSRGTYY------EGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWM 150          
BLAST of FC921624 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.393e-29
Identity = 69/156 (44.23%), Postives = 99/156 (63.46%), Query Frame = 2
Query:  152 MSVEARTGRLRQRYDN-NFRLVSGCIPYRLTKDAEDENEDIQTRIEVLMVSSPNRSD-LVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWM 613
            +S+ +RTGR  QRY+   +R V GC+PYR  K    E       IEVL++S+  +   ++ PKGGWE DE++ EAA RE +EEAGV G+L E  LG W+++SK    +H       G+MF L V+++ EIWPE E R RKW+++ +A +LC+  WM
Sbjct:   42 VSLVSRTGRDLQRYNTAGYRQVVGCVPYRYKKHGGGE-------IEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLEES-LGKWQYKSKRHTMIHD------GHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWM 183          
The following BLAST results are available for this feature:
BLAST of FC921624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD13_ARATH4.157e-5866.88Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH2.694e-5767.74Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
NUD16_ARATH5.454e-4257.33Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUDT4_ARATH8.728e-3246.15Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD18_ARATH5.657e-3149.33Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUD17_ARATH2.150e-3048.00Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD21_ARATH1.393e-2944.23Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32107E01EF RVDevelopN Citrus clementina cDNA clone C32107E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921624 ID=FC921624; Name=FC921624; organism=Citrus clementina; type=EST; length=613bp
CTTTCCAGTTTTTAGTTTTAGAGAAGCGAGGCCAGAACTTTGAACCTTTC
ATCTTCTAGACTTTCTTTATACCCAACAAAAAAACCTGTAGCTTTTTTTT
TCTTTTTTTTTTTCGTTTTTCCCCCTGAAGTTTAAACTATATTTTGATTC
CATGTCTGTGGAAGCAAGAACCGGCCGGCTCCGGCAACGTTATGATAACA
ATTTTCGGCTTGTTTCTGGATGTATTCCCTATAGGCTAACAAAGGATGCT
GAGGATGAAAATGAAGATATACAAACCAGAATAGAAGTCCTTATGGTTTC
TTCACCTAATCGAAGTGATTTAGTGTTCCCAAAGGGTGGATGGGAAAATG
ATGAAACTGTTATGGAAGCTGCTTGTCGTGAAGCCTTAGAGGAAGCAGGA
GTTAGAGGAAAACTGAATGAAAAGCCATTGGGAATTTGGGAGTTTAGAAG
CAAGAGCAAACAGGACCTACATAGCCTGGAAGGAGGCTGCAGGGGGTACA
TGTTTTCATTAGAAGTAACTGAGGAGCTTGAAATCTGGCCAGAGCAGGAA
AACCGCTACAGGAAATGGTTAAACATACAAGATGCCTTTCAACTGTGCCG
TTATGAATGGATG
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