FC921630

Overview
NameFC921630
Unique NameFC921630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921630 vs. ExPASy Swiss-Prot
Match: KIME_ARATH (Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.095e-52
Identity = 113/188 (60.11%), Postives = 133/188 (70.74%), Query Frame = 1
Query:  106 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPAXXXXXXXXXXXXXX-MELNFSWSVTRIKATLSHLGSPF-PSTPTTCSMEVIKSIAVLVDEQNIPGAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLN 663
            MEVKARAPGKIILAGEHAVVHGSTAVAA IDLYTYV+LRFP                + L FSWS+ RIK  + +  S    STP +CS E +KSIAVLV+EQN+P  K+ LSSG + FLWLYT IIGF PATVV+ S+LP G+GLGSSAA CV+LTAALL S  S+       GW +  E++L+LLN
Sbjct:    1 MEVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLRFPLPSAENNDRLTLQLKDISLEFSWSLARIKEAIPYDSSTLCRSTPASCSEETLKSIAVLVEEQNLPKEKMWLSSGISTFLWLYTRIIGFNPATVVINSELPYGSGLGSSAALCVALTAALLAS--SISEKTRGNGWSSLDETNLELLN 186          
BLAST of FC921630 vs. ExPASy Swiss-Prot
Match: KIME_HUMAN (Mevalonate kinase OS=Homo sapiens GN=MVK PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  124 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPAXXXXXXXXXXXXXXMELNFSWSVTRIKA-TLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPGAKIGLSSGATAFLWLYTSIIGFKPA----TVVVTSDLPLGAGLGSSAAFCVSLTAALL 582
            APGK+IL GEHAVVHG  A+A  ++L T++ L+                 + +  +W V R+++   S L     +TPT+  +E +K +A L D+       +       AFL+LY SI   + A     +VV S+LP GAGLGSSAA+ V L AALL
Sbjct:   10 APGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDD-----CAVTERLAVLAFLYLYLSICRKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALL 158          
BLAST of FC921630 vs. ExPASy Swiss-Prot
Match: KIME_BOVIN (Mevalonate kinase OS=Bos taurus GN=MVK PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  124 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPAXXXXXXXXXXXXXXMELNFSWSVTRIK-ATLSHLGSPFPSTPTTCSMEVIKSIAVL----VDEQNIPGAKIGLSSGATAFLWLYTSIIGFKPA----TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSV-HLDKNHQGWLTYGESDLDLLN 663
            APGK+IL GEHAVVHG  A+A  ++L T++ L+                 + +  +W V  ++    S LG    +  T   +E +K +A      VD +++            AFL+LY SI   + A     + V S+LP GAGLGSSAA+ V L AALL +   + +  K+ +    + E +L+L+N
Sbjct:   10 APGKVILHGEHAVVHGKVALAVALNLRTFLRLQ----PHSNGRVGLNLPNIGVRRAWDVASLQLLDTSFLGHGDSAALTAKHVEKLKEVAGFPKDCVDPEHL---------AVLAFLYLYLSICQSQRALPSLDITVWSELPTGAGLGSSAAYSVCLAAALLTACEEIPNPLKDGEAAGRWTEENLELIN 186          
BLAST of FC921630 vs. ExPASy Swiss-Prot
Match: KIME_MOUSE (Mevalonate kinase OS=Mus musculus GN=Mvk PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 60/165 (36.36%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  124 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPAXXXXXXXXXXXXXXMELNFSWSVTRI-KATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPGAKIGLSSGA-TAFLWLYTSII----GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSV 600
            APGK+IL GEHAVVHG  A+AA ++L T++ LR                 + +   W V  + +   S L     S PT   +E +K +       ++P  + G    A  AFL+LY +I           +VV S+LP GAGLGSSAA+ V L AALL +   V
Sbjct:   10 APGKVILHGEHAVVHGKVALAAALNLRTFLLLR----PQSNGKVSVNLPNIGIKQVWDVGMLQRLDTSFLEQGDVSVPTLEQLEKLKKMG------DLPRDRAGNEGMALLAFLYLYLAICRKQRTLPSLDMVVWSELPPGAGLGSSAAYSVCLAAALLTACEEV 164          
BLAST of FC921630 vs. ExPASy Swiss-Prot
Match: KIME_RAT (Mevalonate kinase OS=Rattus norvegicus GN=Mvk PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12
Identity = 67/190 (35.26%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  124 APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPAXXXXXXXXXXXXXXMELNFSWSVTRIKATLSHLGSPF-----PSTPTTCSMEVIKSIAVLVDEQNIPGAKIGLSSGATAFLWLYTSII----GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWL-TYGESDLDLLN 663
            APGK+IL GEHAVVHG  A+A  ++L T++ LR                 + +   W V    ATL  L + F        PT   +E +K +A L   ++  G + GLS    AFL+LY +I           ++V S+LP GAGLGSSAA+ V + AALL +   V      +G + ++ E DL  +N
Sbjct:   10 APGKVILHGEHAVVHGKVALAVALNLRTFLVLR----PQSNGKVSLNLPNVGIKQVWDV----ATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGL--PRDCVGNE-GLS--LLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSIN 186          
BLAST of FC921630 vs. ExPASy Swiss-Prot
Match: KIME_DICDI (Mevalonate kinase OS=Dictyostelium discoideum GN=mvk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  112 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPAXXXXXXXXXXXXXXMELNFSWSVTRIKATLSHLGSPFP-STPTTCSMEVIKSIAVLVDEQNIPGAKIGLSSGATAFLWLYTSIIG-FKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNS 597
            ++  APGKIIL GEHAVV   TA+A+ + L T V+   P                 +   WS+   K  L H  +      P  CS    + +  ++D             G   FL+L+ ++    K   + +TSDLP+GAGLGSSA+FCVS+ A LL + ++
Sbjct:    9 IQVSAPGKIILFGEHAVVLEKTAIASALSLRTTVTFT-PNTNNTLLLDFPDLAGFGVR-EWSLDEFK-KLDHFPNDIDILKPIECSELFQQELNKIID-----------IKGIHTFLFLFCALTKCTKAYNIKITSDLPIGAGLGSSASFCVSICAGLLKAFDT 158          
The following BLAST results are available for this feature:
BLAST of FC921630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KIME_ARATH4.095e-5260.11Mevalonate kinase OS=Arabidopsis thaliana GN=At5g2... [more]
KIME_HUMAN1.797e-1537.97Mevalonate kinase OS=Homo sapiens GN=MVK PE=1 SV=1[more]
KIME_BOVIN4.894e-1332.63Mevalonate kinase OS=Bos taurus GN=MVK PE=2 SV=1[more]
KIME_MOUSE6.391e-1336.36Mevalonate kinase OS=Mus musculus GN=Mvk PE=2 SV=1[more]
KIME_RAT1.424e-1235.26Mevalonate kinase OS=Rattus norvegicus GN=Mvk PE=1... [more]
KIME_DICDI2.685e-1132.93Mevalonate kinase OS=Dictyostelium discoideum GN=m... [more]
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Properties
Property NameValue
Genbank descriptionC32107E08EF RVDevelopN Citrus clementina cDNA clone C32107E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921630 ID=FC921630; Name=FC921630; organism=Citrus clementina; type=EST; length=673bp
GAACAACAAAAGAAAAAATCTTTGTTGTTTGTTTATCTCCGCCAACTTTC
CGTTGCGCGGACTGATACTGATCGTTAAGTAGTTCAGGCTTCAGAAACAA
AACAAATGGAGGTTAAAGCCAGAGCTCCCGGGAAGATTATACTCGCCGGA
GAACACGCCGTGGTTCATGGATCAACGGCGGTGGCAGCCTGCATTGATCT
TTACACTTATGTCTCTCTACGTTTTCCCGCTGATTCTGATGATGACGATA
CATTGAAACTCGTCCTCAAGGATATGGAGCTAAATTTTTCCTGGTCAGTT
ACAAGAATAAAAGCAACACTATCTCACTTGGGTAGTCCATTTCCCTCAAC
ACCCACCACATGCTCAATGGAAGTCATCAAATCTATTGCAGTTCTCGTTG
ACGAGCAAAATATTCCAGGGGCAAAAATTGGACTTTCTTCCGGAGCGACA
GCTTTTCTCTGGTTATACACCTCTATCATTGGGTTTAAGCCTGCCACAGT
CGTTGTTACTTCTGACCTTCCACTAGGTGCAGGCCTTGGTTCATCTGCTG
CATTTTGTGTCTCACTCACAGCTGCTCTGCTTGGTTCCTTAAATTCTGTA
CATTTGGATAAGAACCACCAAGGATGGTTAACATATGGGGAGAGCGATCT
TGATTTGTTGAATAATGGGCTTT
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