FC921635

Overview
NameFC921635
Unique NameFC921635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14359 contig Ccv1_Contig14359:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 2.702e-113
Identity = 196/211 (92.89%), Postives = 197/211 (93.36%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIG+SDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.529e-113
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.529e-113
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.529e-113
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.529e-113
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 407.527 bits (1046), Expect = 3.529e-113
Identity = 194/211 (91.94%), Postives = 197/211 (93.36%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.027e-112
Identity = 194/211 (91.94%), Postives = 196/211 (92.89%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.752e-112
Identity = 192/211 (91.00%), Postives = 196/211 (92.89%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+G SDLQLERVNVYYNEASCGR+VPRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 2.288e-112
Identity = 193/211 (91.47%), Postives = 196/211 (92.89%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIG+KFWEVVCDEHGIDPTGRY GTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
[Close]
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 2.288e-112
Identity = 193/211 (91.47%), Postives = 196/211 (92.89%), Query Frame = 3 
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFVP AVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPGAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
The following BLAST results are available for this feature:
BLAST of FC921635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB3_GOSHI2.702e-11392.89Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB5_WHEAT3.529e-11391.94Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB5_MAIZE3.529e-11391.94Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]
TBB4_ELEIN3.529e-11391.94Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P... [more]
TBB1_WHEAT3.529e-11391.94Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB1_ORYSJ3.529e-11391.94Tubulin beta-1 chain OS=Oryza sativa subsp. japoni... [more]
TBB6_ORYSJ1.027e-11291.94Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB6_ARATH1.752e-11291.00Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_HORVU2.288e-11291.47Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2... [more]
TBB8_MAIZE2.288e-11291.47Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32107F01EF RVDevelopN Citrus clementina cDNA clone C32107F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921635 ID=FC921635; Name=FC921635; organism=Citrus clementina; type=EST; length=710bp
GAACACTCTCATTTGAATTTTATCTCACTCTCATTTTTTCTCTCTCTAGC
GAAAATCTTCAGTAAGTCTCAGGAAAAATGAGGGAGATCCTTCATGTTCA
GGGTGGACAATGTGGTAACCAGATTGGTTCCAAGTTCTGGGAGGTTGTCT
GTGATGAACATGGCATCGACCCAACCGGAAGATACATTGGCACCTCAGAT
CTGCAGTTGGAGCGTGTCAATGTCTACTACAATGAGGCCTCCTGTGGGCG
GTTTGTTCCTCGTGCAGTTCTCATGGATTTGGAGCCTGGCACCATGGACA
GTGTTAGAACTGGTCCATACGGCCAGATTTTCAGGCCTGATAACTTTGTG
TTTGGACAGTCTGGTGCTGGAAACAATTGGGCCAAGGGTCACTACACTGA
GGGTGCTGAGCTTATTGATGCTGTTCTTGATGTTGTGAGAAAAGAGGCTG
AGAACTGTGACTGTCTTCAAGGTTTCCAAGTCTGCCACTCTTTGGGTGGA
GGAACTGGTTCTGGAATGGGTACCTTGTTGATCTCAAAAATTAGGGAGGA
GTATCCTGACAGGATGATGCTCACATTCTCAGTGTTCCCTTCTCCAAAGG
TCTCCGATACAGTTGTTGAGCCCTACAATGCAACCCTCTCTGTTCACCAG
CTTGTTGAGAATGCAGATGAGTGCATGGTCCTTGATAATGAGGCTTTGTA
TGACATCTGC
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