FC921659

Overview
NameFC921659
Unique NameFC921659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10606 contig Ccv1_Contig10606:92..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921659 vs. ExPASy Swiss-Prot
Match: C3H63_ARATH (Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 57/133 (42.86%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:  280 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNS---NINNRAVIKTDILCRNWVQGNCMYGEKCSF 669
            MDFD +GGNKRVF+RL           ++  DTRQKVC +WRAG+CNR PCPYLHRELP P                                 GNS +S      NR V KT+ +C  WV GNC YG+KC +
Sbjct:    1 MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPGPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVCNFWVDGNCTYGDKCRY 131
[Close]
BLAST of FC921659 vs. ExPASy Swiss-Prot
Match: C3H48_ARATH (Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 53/130 (40.77%), Postives = 63/130 (48.46%), Query Frame = 1 
Query:  280 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCSF 669
            MD D +GGNKRVF RL             T D+ QKVC +WRAG+CNR+PCPYLHRELP P                                  N+      NR V KT+ LC+ WV GNC YG+KC +
Sbjct:    1 MDLDMNGGNKRVFQRLGGGSNRP------TTDSNQKVCFHWRAGRCNRYPCPYLHRELPGPGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGGNRTVTKTEKLCKFWVDGNCPYGDKCRY 124
The following BLAST results are available for this feature:
BLAST of FC921659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H63_ARATH7.736e-2242.86Zinc finger CCCH domain-containing protein 63 OS=A... [more]
C3H48_ARATH3.839e-2140.77Zinc finger CCCH domain-containing protein 48 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC32107H02EF RVDevelopN Citrus clementina cDNA clone C32107H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921659 ID=FC921659; Name=FC921659; organism=Citrus clementina; type=EST; length=682bp
GTATCTTTCTCAGAAACCTTAAATTTACAATTGATTTTCCTCATCGGTCA
TCACTCAGTGAAATTAAAATTAGGGTTTCTGATTTTGCAAATCCCTCCAA
TTGAAACTCACCACGAAAAGATTCAATTTTGAGACTAAATTTAGGGTTTT
TTTGTTATGATAAGATTCGATTTCAATCGGGCATCTTACGTGTCGGATTC
GAGCAATTTCATTATTATTCAACGGTCTCATTCTCATTCATCTTTCTGTT
ATTTCCGTTATTATTAATAATAATTGGTTATGGATTTCGACGCGCACGGT
GGCAACAAGCGCGTGTTCCATCGACTAGGAGGAGCTGGTGGTGACGGCGG
TGGCGGTGGGCTCTCAACGGCCGATACAAGGCAGAAAGTATGTAACTATT
GGCGCGCTGGAAAGTGTAATCGGTTTCCATGTCCGTACTTACACAGAGAA
TTGCCACTGCCGCCGGCGGCAACAGCTAACGGTGCTGCTGCGAAGCGGTT
TGCGAATAACACGTGGGGTAGAAATAATAATTTTAATAATCATAGCAATA
ATTATAGGGCGGGTAATAGTAAAAATAGTAATATTAATAATAGGGCTGTT
ATAAAGACGGATATATTGTGTAGAAATTGGGTTCAAGGGAATTGTATGTA
TGGAGAGAAGTGCAGTTTTTGCATTCTTGGAC
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