FC921660

Overview
NameFC921660
Unique NameFC921660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921660_ssr572 microsatellite FC921660_ssr572:572..583. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14329 contig Ccv1_Contig14329:8..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STA_RICCO (Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 3.617e-77
Identity = 122/148 (82.43%), Postives = 137/148 (92.57%), Query Frame = 1
Query:  106 KEGI*EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 549
            ++G+ E+GR VLEKIRGTK V+AE+QDM+DASELANSIKHPFRNILE+RNRPQLVMAIFMP FQILTGIN ILFYAP LFQSMGF G+A+LYSSA+TGAVL SST ISIATVD+LGRR LLISGGIQMITCQVIV+IILG+KFG NQ+
Sbjct:  233 EQGLHEKGRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVMAIFMPTFQILTGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRFLLISGGIQMITCQVIVAIILGVKFGDNQQ 380          

HSP 2 Score: 68.5514 bits (166), Expect = 3.617e-77
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    3 ETWGCRLSLGLAAAPALMMTVGGILLPETPNSLIERG 113
            E+WG RLSLGLAAAPAL+MT+GG+LLPETPNSLIE+G
Sbjct:  199 ESWGWRLSLGLAAAPALLMTIGGLLLPETPNSLIEQG 235          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.140e-72
Identity = 118/148 (79.73%), Postives = 133/148 (89.86%), Query Frame = 1
Query:  106 KEGI*EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 549
            + G+ E GRRVL K+RGT+ VNAE QDMVDASELANSIKHPFRNIL++R+RPQLVMAI MPMFQILTGINSILFYAPVLFQ+MGF G+ASLYSSA+TGAVL  ST ISI  VD+LGRRALLI+GGIQMI CQVIV++ILG+KFG NQE
Sbjct:  233 ERGLTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFGDNQE 380          

HSP 2 Score: 61.6178 bits (148), Expect = 1.140e-72
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3
Query:    9 WGCRLSLGLAAAPALMMTVGGILLPETPNSLIERG 113
            WG RLSLGLAA PAL+MT+GG  LPETPNSL+ERG
Sbjct:  201 WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERG 235          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 7.562e-53
Identity = 80/137 (58.39%), Postives = 109/137 (79.56%), Query Frame = 1
Query:  121 EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLK 531
            +EG+ VL +IRGT  V  E+ D+++AS LA  +KHPFRN+L+RRNRPQLV+A+ + +FQ  TGIN+I+FYAPVLF ++GF  DASLYS+ +TGAV   STL+SI +VDK+GRR LL+  G+QM   QV+++IILG+K
Sbjct:  237 DEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVK 373          

HSP 2 Score: 57.3806 bits (137), Expect = 7.562e-53
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 3
Query:    9 WGCRLSLGLAAAPALMMTVGGILLPETPNSLIERGNI 119
            WG RLSLGLA  PAL++TVG +L+ ETPNSL+ERG +
Sbjct:  200 WGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRL 236          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STP14_ARATH (Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.800e-49
Identity = 78/149 (52.35%), Postives = 109/149 (73.15%), Query Frame = 1
Query:  106 KEGI*EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVM-AIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 549
            ++G  E+ + VL K+RGT  + AE+QD+V+AS+ A ++K+PFRN+L RRNRPQLV+ AI +P FQ LTG+NSILFYAPV+FQS+GF G ASL SS +T A L  + ++S+ + DK GRR LL+   ++M    V+V + L LKFG  +E
Sbjct:  233 EQGKLEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKFGEGKE 381          

HSP 2 Score: 58.151 bits (139), Expect = 2.800e-49
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 3
Query:    9 WGCRLSLGLAAAPALMMTVGGILLPETPNSLIERGNI 119
            WG RLSLGLA  PA++M +GG++LPETPNSL+E+G +
Sbjct:  201 WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKL 237          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.297e-47
Identity = 73/144 (50.69%), Postives = 103/144 (71.53%), Query Frame = 1
Query:  106 KEGI*EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 537
            + G  EE + +L+ IRGT EV+ E+QD++DASE +  +KHP++NI+  R RPQL+M  F+P FQ LTGIN I FYAPVLFQ++GF   ASL S+ +TG +    T +S+ TVD+ GRR L + GGIQM+  Q+ +  ++G+KFG
Sbjct:  230 ERGYTEEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVKFG 373          

HSP 2 Score: 51.6026 bits (122), Expect = 4.297e-47
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3
Query:   12 GCRLSLGLAAAPALMMTVGGILLPETPNSLIERG 113
            G R+SLGLA  PA+M+ +G ++LP+TPNSLIERG
Sbjct:  199 GWRISLGLACVPAVMIMIGALILPDTPNSLIERG 232          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.616e-46
Identity = 75/143 (52.45%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  121 EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE 549
            E+ + +L+KIRGT EV  E+ ++ +A E A  +KHP+ NI++ R RPQL    F+P FQ LTGIN I+FYAPVLF+++GF  DASL S+ +TG V   ST++SI +VDK GRRAL + GG QMI  Q+ V  ++G KFG N E
Sbjct:  238 EKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNGE 380          

HSP 2 Score: 52.373 bits (124), Expect = 1.616e-46
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 3
Query:   12 GCRLSLGLAAAPALMMTVGGILLPETPNSLIERGN 116
            G RLSLGLA  PA+MM VG   LP+TPNS++ERGN
Sbjct:  202 GWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGN 236          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.576e-46
Identity = 72/139 (51.80%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  121 EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 537
            EE R  L+++RG ++V+ E+ D+V ASE +  ++HP+RN+L+R+ RP L MAI +P FQ LTGIN I+FYAPVLF ++GF  DA+L S+ +TG V   +T++SI  VDK GRR L + GG+QM+ CQ IV+  +G KFG
Sbjct:  238 EEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFG 376          

HSP 2 Score: 54.299 bits (129), Expect = 3.576e-46
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 3
Query:    9 WGCRLSLGLAAAPALMMTVGGILLPETPNSLIERG 113
            WG RLSLG A  PAL++TVG ++LP+TPNS+IERG
Sbjct:  201 WGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERG 235          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.119e-44
Identity = 70/139 (50.36%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  121 EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 537
            E  + +L+++RGT +V AE  D++ AS ++ +I+HPF+NI+ R+ RPQLVMA+ +P FQ +TGIN I FYAP+LF+++G +  ASL SS +TG V ++ST IS+  VDKLGRRAL I GG+QM   Q++V  I+  + G
Sbjct:  236 ERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELG 374          

HSP 2 Score: 53.1434 bits (126), Expect = 1.119e-44
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 3
Query:    9 WGCRLSLGLAAAPALMMTVGGILLPETPNSLIERGNIGGREK 134
            WG R+SL +AA PA ++T G + LPETPNSLI+R N   R K
Sbjct:  198 WGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAK 239          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.479e-44
Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = 1
Query:  139 LEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 537
            L KIRG  +++ E  D++ ASE +  ++HP+RN+L+R+ RP L MAI +P FQ LTGIN I+FYAPVLFQ++GF  DA+L S+ +TG V   +T++SI  VDK GRR L + GG QM+  QV V+  +G KFG
Sbjct:  240 LRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHLTMAILIPAFQQLTGINVIMFYAPVLFQTIGFGSDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGGFQMLISQVAVAAAIGAKFG 372          

HSP 2 Score: 55.4546 bits (132), Expect = 5.479e-44
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 3
Query:    6 TWGCRLSLGLAAAPALMMTVGGILLPETPNSLIERG 113
            +WG RLSLG A  PAL++TVG ++LP+TPNS+IERG
Sbjct:  196 SWGWRLSLGGAVVPALIITVGSLILPDTPNSMIERG 231          
BLAST of FC921660 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.580e-43
Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 1
Query:  121 EEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILER-RNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG 537
            E+ R +L+KIRG   V+ E+QD+ DA E A  + +P++NI ++ + RP LV    +P FQ +TGIN I+FYAPVLF+++GF  DASL S+ +TGAV   STL+SI  VD+ GRR L + GGIQMI  Q++V  ++G+KFG
Sbjct:  237 EQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFG 376          

HSP 2 Score: 50.447 bits (119), Expect = 1.580e-43
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 3
Query:   12 GCRLSLGLAAAPALMMTVGGILLPETPNSLIERG 113
            G R+SLGLAA PA++M +G  +LP+TPNS++ERG
Sbjct:  201 GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERG 234          
The following BLAST results are available for this feature:
BLAST of FC921660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
STA_RICCO3.617e-7782.43Sugar carrier protein A OS=Ricinus communis GN=STA... [more]
STP7_ARATH1.140e-7279.73Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]
STP13_ARATH7.562e-5358.39Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP14_ARATH2.800e-4952.35Sugar transport protein 14 OS=Arabidopsis thaliana... [more]
STP4_ARATH4.297e-4750.69Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
STP11_ARATH1.616e-4652.45Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STC_RICCO3.576e-4651.80Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
HEX6_RICCO1.119e-4450.36Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
STP12_ARATH5.479e-4451.88Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
STP9_ARATH1.580e-4350.71Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC32107H03EF RVDevelopN Citrus clementina cDNA clone C32107H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921660 ID=FC921660; Name=FC921660; organism=Citrus clementina; type=EST; length=594bp
TCGAGACGTGGGGATGCAGGCTCTCACTTGGTCTAGCAGCGGCACCGGCT
TTAATGATGACTGTGGGAGGAATACTTCTCCCTGAAACACCTAACAGCTT
AATCGAAAGAGGGAATATAGGAGGAAGGGAGAAGAGTCCTAGAGAAAATC
AGAGGAACCAAAGAGGTCAATGCGGAGTATCAAGACATGGTAGATGCAAG
TGAATTGGCTAACTCCATAAAGCACCCGTTTAGAAACATTCTTGAGAGAA
GGAACAGGCCGCAATTGGTTATGGCAATATTCATGCCGATGTTTCAGATC
CTCACAGGCATCAATTCCATTCTCTTCTATGCTCCAGTTTTGTTCCAGTC
TATGGGATTTAAGGGAGATGCTTCACTCTATTCCTCTGCTATGACTGGAG
CAGTTCTTGCATCTTCTACACTCATTTCTATTGCGACTGTTGATAAACTT
GGTCGAAGAGCTTTACTCATAAGTGGGGGAATACAAATGATCACATGCCA
GGTCATAGTGTCCATAATCCTGGGGCTCAAGTTTGGACCCAACCAAGAAC
TATCATAATCCTTCTCAATACTGGTGGTGGTGGTGATTTGCCTA
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