FC921662

Overview
NameFC921662
Unique NameFC921662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14364 contig Ccv1_Contig14364:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921662 vs. ExPASy Swiss-Prot
Match: BAHC1_HUMAN (BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=BAHCC1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 40/127 (31.50%), Postives = 61/127 (48.03%), Query Frame = 1 
Query:  295 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL-ENVGAED----YFCRFEYKAATGGF-TPDRVAVYC 657
            + +R GDC +   A     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L+ S H D     TI  KC V   + Y ++  +   +D    Y+    Y   TG   T D V + C
Sbjct: 2482 ETLRVGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYHPEETKLGKRQCDGKNALYQSCHEDENDVQTISHKCQVVAREQYEQMARSRKCQDRQDLYYLAGTYDPTTGRLVTADGVPILC 2608
The following BLAST results are available for this feature:
BLAST of FC921662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BAHC1_HUMAN8.621e-1131.50BAH and coiled-coil domain-containing protein 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionC32107H06EF RVDevelopN Citrus clementina cDNA clone C32107H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921662 ID=FC921662; Name=FC921662; organism=Citrus clementina; type=EST; length=713bp
GTTCTGGCTTCTCAACAAAACCCCACTTTCTCCCTCTCCATCTTCCTCTA
TTTCTCTCTCTGCAGTCTGCACTGTCTAGGGTTTCTCTGTGCACTGAACA
TTGACGCTCAACCTTTGCACAAAACCCACGAAGGCCTTGCAATCAAACAA
ATAAATTGAATACATTTCCCTCAAACTCTCTTGCCGAGTAAAAACAGAAA
AAAAAAAAGAAAAAGAAAAAAATCAATCTTTCTCATGGCAAAAACCAAAC
CTGGGAAAAAAGACCTTGACTCATACAACATCGAAGGCACCAACAAAGTT
GTCAGACCTGGTGATTGTGTGCTAATGAGACCAGCGGACTCTGATAAGCC
CCCGTACGTGGCGCGTGTGGAGAAGATTGAGGCTGATCATCGGAACAACG
TGAAAGTTCGTGTACGGTGGTACTATCGACCTGAGGAGTCAATCGGAGGG
CGGAGACAGTTCCATGGAGCTAAGGAGTTGTTTTTATCAGACCACTATGA
TGTGCAAAGTGCTCACACTATTGAAGGGAAATGTACAGTACACACTTTTA
AGAACTACACCAAGCTTGAGAATGTTGGTGCCGAGGATTATTTTTGTAGG
TTTGAATATAAAGCTGCCACTGGAGGCTTCACTCCGGACCGCGTGGCTGT
TTATTGCAATGTGAGATGCATATACCCAGACGACTGATGGTGAGTGTGAG
GATGCAAAGATGG
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