FC921667

Overview
NameFC921667
Unique NameFC921667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_BOVIN (Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 76/188 (40.43%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  112 VASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSERI 675
            + +  V  + L+     V + +WG T+ ++ + D+ G+  DV LG+D +  Y     Y GA VGRVANRI    FTLDG  YKL  N G N LHGG  GF  V+W      N      + F+  S DGE+G+PG+L V V YTL G  +L V  +A+A ++ TPVNL  H+Y+NL G  S +I    +
Sbjct:   14 LGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQKQPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVKGFDKVLWTPRVLSN-----GVEFSRVSPDGEEGYPGELKVWVMYTLDGG-ELVVNYRAQA-SQTTPVNLTNHSYFNLAGQGSPNIYDHEV 194          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_PIG (Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 80/194 (41.24%), Postives = 108/194 (55.67%), Query Frame = 1
Query:  100 VHGSVASNA--VGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSERI 675
            V G + S A  V  + L+     V + +WG T+ ++ + D+ G+  DV LG+  + +Y     Y GA VGRVANRI    FTLDG  YKL  N G N LHGG  GF  V+W      N      I F+  S DGE+G+PG+L V V YTL G  +L V  +A+A ++ TPVNL  H+Y+NL G  S +I    +
Sbjct:    8 VFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFAELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTPRVLSN-----GIEFSRVSPDGEEGYPGELKVWVTYTLDGG-ELVVNYRAQA-SQTTPVNLTNHSYFNLAGQGSPNIYDHEV 194          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_RAT (Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.885e-31
Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 1
Query:   79 LVAFGFVVHGSVASN--AVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSERI 675
            +V+    V G + S   AV  + L+    +V + +WG T+ ++ + D+ GK  DV LG+  +  Y     Y GA VGRVANRI   +FT+DG  Y L  N   N LHGG  GF  V+W  +   N      + F+  S DGE+G+PG+L V V YTL G  +L V  +A+A ++ TPVNL  H+Y+NL G  S DI    +
Sbjct:    1 MVSVTRTVFGELPSGGGAVEKFQLRSDQLNVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQKQPYFGAVVGRVANRIAKGRFTVDGKEYHLPINREPNSLHGGFRGFDKVLWTPQVLSN-----GVQFSRVSPDGEEGYPGELKVWVTYTLDGG-ELVVNYRAQA-SQTTPVNLTNHSYFNLAGQGSPDIYDHEV 194          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_MOUSE (Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 76/201 (37.81%), Postives = 108/201 (53.73%), Query Frame = 1
Query:   79 LVAFGFVVHGSVASNA--VGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSERI 675
            +V+    V G + S    V  + L+    SV + +WG T+ ++ + D+ GK  DV LG+  +  Y     Y GA VGRVANRI   +FT+ G  Y L  N   N LHGG  GF  V+W  +   N      + F   S DGE+G+PG+L V V YTL G  +L +  +A+A ++ TPVNL  H+Y+NL G  S +I    +
Sbjct:    1 MVSVTRTVFGELPSGGGTVEKFQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQKQPYFGAVVGRVANRIAKGRFTIGGKEYHLPVNREPNSLHGGFTGFDKVLWTPQVLTN-----GVQFFRVSPDGEEGYPGELKVWVTYTLDGG-ELVINYRAQA-SQTTPVNLTNHSYFNLAGQGSPNIYDHEV 194          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_PONAB (Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 71/180 (39.44%), Postives = 100/180 (55.56%), Query Frame = 1
Query:  136 YDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSERI 675
            + L+     V + +WG T+ ++ + D+ G+  DV LG+  +  Y     Y GA +GRVANRI    F +DG  Y L  N+  N LHGG  GF  V+W      N      I F+  S DGE+G+PG+L V V YTL G  +L V  +A+A ++ATPVNL  H+Y+NL G  S +I    +
Sbjct:   22 FQLQSDLLRVDIISWGCTITALEVKDRQGRSSDVVLGFAELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN-----GIQFSRISPDGEEGYPGELKVWVTYTLDGG-ELVVNYRAQA-SQATPVNLTNHSYFNLAGQGSPNIYDHEV 194          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_SHIFL (Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 68/175 (38.86%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  163 VKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSERIQNFA 687
            V L +WGATL+S  +P   G + +  LG  S   Y++ ++++GA++GR ANRI  +++T DG    L  ++G N LHGG  GF    W++   QN+     ++FA  S DG+QGFPG+L  TV Y L  D ++ +T +A  ++K  PVN+  H Y+NL G  S D+ + ++Q  A
Sbjct:   28 VTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVN-QND---RQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRA-TVDKPCPVNMTNHVYFNLDGEQS-DVRNHKLQILA 196          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_ECOLI (Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 68/175 (38.86%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  163 VKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSERIQNFA 687
            V L +WGATL+S  +P   G + +  LG  S   Y++ ++++GA++GR ANRI  +++T DG    L  ++G N LHGG  GF    W++   QN+     ++FA  S DG+QGFPG+L  TV Y L  D ++ +T +A  ++K  PVN+  H Y+NL G  S D+ + ++Q  A
Sbjct:   28 VTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVN-QND---RQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRA-TVDKPCPVNMTNHVYFNLDGEQS-DVRNHKLQILA 196          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_HUMAN (Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 75/196 (38.27%), Postives = 105/196 (53.57%), Query Frame = 1
Query:   73 VVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDI 660
            V    FG +  G      V  + L+     V + +WG T+ ++ + D+ G+  DV LG+  +  Y     Y GA +GRVANRI    F +DG  Y L  N+  N LHGG  GF  V+W      N      + F+  S DGE+G+PG+L V V YTL G  +L V  +A+A ++ATPVNL  H+Y+NL G  S +I
Sbjct:    4 VTRAVFGELPSGG---GTVEKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN-----GVQFSRISPDGEEGYPGELKVWVTYTLDGG-ELIVNYRAQA-SQATPVNLTNHSYFNLAGQASPNI 189          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_ACICA (Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 68/191 (35.60%), Postives = 102/191 (53.40%), Query Frame = 1
Query:  127 VGVYDLKKGN-FSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYK----NDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNL--GGHNSGDILSERIQ 678
            V +Y +   N  SV   ++G  +  ++ PD  GK  ++ LG+D +  Y+     +  + G  +GR ANRIG A+F+LDG  Y L  N G N LH G  GF   VW+V+   ++G          S +G+QGFPG L V V Y+L    + ++  KAK  ++ T VNL  H+Y+NL   G+N   +L   +Q
Sbjct:   37 VDLYTMSNNNGVSVSFISFGGVITQILTPDAQGKQNNIVLGFDDLKGYEVTDTKEGIHFGGLIGRYANRIGNAKFSLDGKTYNLEKNNGPNSLHSGNPGFDKRVWQVKPLVSKGETVKASLKLTSPNGDQGFPGKLDVEVIYSLSDQNEFKIEYKAKT-DQPTVVNLTNHSYFNLSGAGNNPYGVLDHVVQ 226          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_HAEIN (Aldose 1-epimerase OS=Haemophilus influenzae GN=galM PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 70/169 (41.42%), Postives = 100/169 (59.17%), Query Frame = 1
Query:  163 VKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSE 669
            V+  +WGAT +S  +P  +  L +V LG   V++Y    SY+GA+VGR ANRI  AQF L+G   KL +N+GK+ LHGG+ GF    W ++    E     + F+  S DG+QGFPG++ V+V YTL GD  +++   A   +K T +NL  HTY+NL     G  + E
Sbjct:   28 VQFMDWGATWLSCKVP-VNDTLREVLLGC-KVDNYPTHQSYLGASVGRYANRIANAQFELNGELIKLSSNQGKHQLHGGE-GFDKRRWNIQ----ECGENFVCFSLHSVDGDQGFPGNVDVSVTYTLTGDNSVKIEY-AGMCDKDTALNLTNHTYFNLENAEQGSDVRE 188          
The following BLAST results are available for this feature:
BLAST of FC921667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GALM_BOVIN1.705e-3240.43Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1[more]
GALM_PIG2.909e-3241.24Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1[more]
GALM_RAT1.885e-3139.30Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE... [more]
GALM_MOUSE7.921e-3037.81Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV... [more]
GALM_PONAB6.706e-2939.44Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV... [more]
GALM_SHIFL8.758e-2938.86Aldose 1-epimerase OS=Shigella flexneri GN=galM PE... [more]
GALM_ECOLI8.758e-2938.86Aldose 1-epimerase OS=Escherichia coli (strain K12... [more]
GALM_HUMAN1.494e-2838.27Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV... [more]
GALM_ACICA4.806e-2735.60Aldose 1-epimerase OS=Acinetobacter calcoaceticus ... [more]
GALM_HAEIN5.313e-2641.42Aldose 1-epimerase OS=Haemophilus influenzae GN=ga... [more]

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Properties
Property NameValue
Genbank descriptionC32107H12EF RVDevelopN Citrus clementina cDNA clone C32107H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921667 ID=FC921667; Name=FC921667; organism=Citrus clementina; type=EST; length=692bp
GGAGAAGACCAAAGTGGTTTCATCTTTTTGTGTAGGAAAATAAAAATGAG
GAGTTCTCTGGTGCTGTGTTTTGTCGTGTTAGTTGCTTTTGGGTTTGTTG
TTCATGGTTCTGTAGCTAGTAATGCCGTTGGAGTTTATGATCTCAAGAAG
GGAAATTTCTCTGTGAAGCTCACTAACTGGGGTGCCACTCTTATTTCTGT
TGTTCTTCCCGACAAGCATGGAAAGCTGATTGATGTTGCCCTTGGATATG
ATTCAGTCAATGACTACAAGAATGATTCATCTTACATTGGAGCAACTGTT
GGACGGGTTGCTAATAGAATCGGAGGTGCCCAATTTACCTTGGACGGAAT
CCATTATAAGCTAGTTGCCAATGAAGGCAAAAACATGCTTCACGGTGGCA
AAATAGGCTTTAGTGATGTTGTTTGGAAAGTCGAGAAGTATCAGAATGAA
GGCCATGCTCCTCACATTATCTTTGCCTACCGCAGCTATGATGGCGAACA
AGGATTCCCTGGGGATCTCTCTGTCACTGTGGGCTACACTCTTGTTGGAG
ACAAGCAGCTGAGAGTAACAATGAAAGCCAAAGCTCTAAACAAAGCTACT
CCGGTAAATCTAGCACAACACACATACTGGAATCTGGGTGGACACAACAG
TGGTGATATCCTGTCCGAAAGAATCCAGAATTTTGCTTCTTA
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