FC921668

Overview
NameFC921668
Unique NameFC921668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14024 contig Ccv1_Contig14024:209..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.934e-77
Identity = 137/186 (73.66%), Postives = 153/186 (82.26%), Query Frame = 3
Query:  111 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCTLVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVEWRTQCS 668
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRH+IYNGACNLTLPMKDLWLAVYI+DAVLVFF+IPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VC LVLGILYG++GKVDF+VRHLSS TT FPTSW+FS  Q  +     QCS
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIPFAMFFYEGDQDKALGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLSSATTTFPTSWQFSNNQPCIGNTARQCS 186          
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 3.198e-76
Identity = 135/186 (72.58%), Postives = 153/186 (82.26%), Query Frame = 3
Query:  111 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCTLVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVEWRTQCS 668
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRHAIYNGACNLTLPMKDLWLA+YI+DA+LVFFVIPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VC LVLGILYG++GKVDF+VRHL+S T+ FPTSW+FS  Q  +     QCS
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIPFAMFFYEGDQDKTLGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLASATSTFPTSWQFSNTQPCIGNTARQCS 186          
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.879e-68
Identity = 130/187 (69.52%), Postives = 146/187 (78.07%), Query Frame = 3
Query:  111 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCTLVLGILYGLVGKVDFTVRHLSSTTTNFPTSW-EFSGGQHVLVEWRTQCS 668
            MGDFN                 +VYLL+NYQHPDDANQAYFPK VVVLG++VA +SILMLPADVANRQACR AIY+GAC+LTLPMK LWLAVYI DAVLVF VIPFAMFYYEGDQDKSVGKR+ SAL+WV ++A+VC L+LGILYGLVGKVDFTVRHLSS    FP S+  FS GQ  +     QC+
Sbjct:    1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWLAVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTSALLWVAVSAVVCGLILGILYGLVGKVDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCA 187          
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: Y3610_DICDI (LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  177 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCTLVLGILYGL 551
            ++YL+  +QHPDD N AYFPK +V+LG+++AA SILMLP DVAN+         G      PM  LW+ +YI+ AV    + PFAMF+YE ++ D + G +I  A      ++      T+VL + +G+
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGITLAATSILMLPLDVANQGG------KGG----FPMDILWIVIYIVVAVFAIVICPFAMFFYESEEADPAAGSQIAGAFKGTFAILFAFAALTIVLYVFFGV 139          
BLAST of FC921668 vs. ExPASy Swiss-Prot
Match: Y3707_DICDI (LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  177 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCTLVLGILYGL 551
            ++YL+  +QHPDD N AYFPK +V+LGL++AA SILMLP DVAN         +G      PM  LW+ +YI  AV    + PFAMF+YE ++ D   G +I  A      ++      T+VL + +G+
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGLTLAATSILMLPLDVAN---------DGGSG-GFPMDILWIIIYIAVAVFAVVICPFAMFFYESEEADPGAGSQIAGAFKGTFAILFAFTALTIVLYVFFGV 139          
The following BLAST results are available for this feature:
BLAST of FC921668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LMBD2_ARATH4.934e-7773.66LIMR family protein At5g01460 OS=Arabidopsis thali... [more]
LMBD1_ARATH3.198e-7672.58LIMR family protein At3g08930 OS=Arabidopsis thali... [more]
LMBD1_ORYSJ1.879e-6869.52LIMR family protein Os06g0128200 OS=Oryza sativa s... [more]
Y3610_DICDI7.241e-2040.31LIMR family protein DDB_G0293610 OS=Dictyostelium ... [more]
Y3707_DICDI2.107e-1941.09LIMR family protein DDB_G0283707 OS=Dictyostelium ... [more]
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Properties
Property NameValue
Genbank descriptionC32108A01EF RVDevelopN Citrus clementina cDNA clone C32108A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921668 ID=FC921668; Name=FC921668; organism=Citrus clementina; type=EST; length=685bp
GAATTTCAAAAAAACAAAAAAAAAAGGACCAGATCTACACAAAATTTGCT
GAAACCCTAATTCGTGCGATCCGTCGTTTTGATCGGAATCGAGAGAGAGG
TTAAAACAAAATGGGTGACTTTAACCTCGCTCTGGTGATCGTCGCGATAG
TGGTGTGCGTTTTGGTATTCATTTTCAATGTCTATCTTCTCGTTAACTAC
CAGCATCCCGACGACGCCAACCAGGCGTATTTTCCGAAATTCGTCGTCGT
TTTGGGGCTTTCCGTTGCCGCTATTTCAATTCTTATGTTGCCGGCTGACG
TGGCCAATCGGCAGGCGTGTAGGCACGCGATTTATAATGGCGCCTGTAAT
CTCACCTTGCCGATGAAGGATCTTTGGCTTGCTGTCTATATTCTCGATGC
GGTGCTTGTTTTCTTCGTTATTCCGTTCGCAATGTTCTATTACGAAGGCG
ACCAGGATAAGAGTGTGGGCAAAAGGATTAAGAGCGCTTTAATTTGGGTG
ATTATGACGGCTATTGTCTGTACCCTTGTGCTTGGCATTTTGTATGGTCT
AGTTGGGAAGGTTGACTTCACTGTTAGACACCTCTCTTCAACTACTACTA
ATTTTCCGACTTCTTGGGAGTTCTCTGGTGGTCAACATGTGTTGGTGGAG
TGGCGTACACAGTGTTCGGATATTTACAATGAACA
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