FC921681

Overview
NameFC921681
Unique NameFC921681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14368 contig Ccv1_Contig14368:1..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.454e-29
Identity = 75/194 (38.66%), Postives = 116/194 (59.79%), Query Frame = 2
Query:   47 CKFLSVLFLSFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            C+ +S  F S++  N+++  +      +   +V+L E  G   ++TLNRPR LN ++  ++  +   L+KWE+D +  L+I+KG G +AF AGGD++   + RN+    L+ ++R  Y L + I + +K  +AL HGITMGGG  + V  +F V TEK+VF+ PE +IG   D G  +   RL G LG FLALT
Sbjct:    7 CRLMS-RFNSYKRTNIILQHLKMSNHTDAAAEVLL-ERKGCAGVITLNRPRFLNTLTLGMIRQIYAQLKKWEQDPKTFLIIIKGAGEKAFCAGGDIRALSEARNTNQKMLQDLFREEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFRVATEKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALT 198          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.141e-29
Identity = 70/161 (43.48%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  146 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            VL E++G   ++TLNRP+ LN ++  ++  +   L+KW+KD    +VI+KG G +AF AGGD++   +   + +   +V +R  Y L + I TY+K  VAL +GITMGGG  L V  +F V TEKT+F+ PE  IG   D G  +   RL G LG FLALT
Sbjct:   34 VLFEKVGKAGVITLNRPKALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCAGGDIRAIAEAGKAGNLLSQVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFLALT 194          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.544e-28
Identity = 72/187 (38.50%), Postives = 109/187 (58.29%), Query Frame = 2
Query:   68 FLSFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            F +F+  N ++  +      +  E+V+L E+ G   ++TLNRP+ LN ++  ++  +   L+KWE+D    L+I+KG G +AF AGGD+++  +   +K     V +R  Y L + + + +K  VAL HGITMGGG  L V  +F V TEK +F+ PE +IG   D G  +   RL G LG FLALT
Sbjct:   13 FNAFKRTNTILHHLRMSKHTDAAEEVLL-EKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALT 198          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.347e-27
Identity = 73/195 (37.44%), Postives = 109/195 (55.90%), Query Frame = 2
Query:   68 FLSFESANLLID*MAQGVVKNP------DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVGRAFSAGGDLKM----FYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            FLS  +++     M++  ++NP          VL E     R+ TLNRP+ LN I+  ++  +   L   E+ + AK++I+KG GR+FS+GGD+K       DG+  +        + Y L H + TY+K  VAL +GITMGGG+ L + + F +  E T+F+ PE  IG+ TD   SF  SRLPG+ G +L LT
Sbjct:   30 FLSLNASST----MSRAFIRNPKFYSTSSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPE--VRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLT 218          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.729e-27
Identity = 69/161 (42.86%), Postives = 94/161 (58.39%), Query Frame = 2
Query:  146 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            VL ++ G   ++TLNRP+ LN +S K++  +   ++ WE+D    L+I+KG G +AF AGGD++   D   + D+     +R  Y L + I T KK  VAL  GITMGGG  L V   F V TEKTVF+ PE +IG   D G  +   RL G +G  LALT
Sbjct:   37 VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAIADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALT 197          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = 2
Query:  164 GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            G   ++TLNRP+ LN ++  ++ L+   L  WE+D    LVI+KGVG +AF AGGD++   D   + D   +  +R  Y L + I TYKK  VAL  GITMGGG  L V   F V +E T+F+ PE +IG   D G  +   RLPG LG +LALT
Sbjct:   43 GCAGVITLNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAVTDAGKAGDRLAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLPGKLGLYLALT 197          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.658e-26
Identity = 71/187 (37.97%), Postives = 107/187 (57.22%), Query Frame = 2
Query:   68 FLSFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            F S   A++++  +     K+ +   VL E  G   ++TLNRP+ LN +S  ++  +   L+KWE+D    L+I+KG G +AF AGGD+K   + + +  +  + ++R  Y L + I + +K  VAL  GITMGGG  L V  +F V TE+++F+ PE  IG   D G  +   RL G LG FLALT
Sbjct:   13 FSSIRRASVILQHLRMS--KHTETAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLSQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALT 197          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 70/185 (37.84%), Postives = 106/185 (57.30%), Query Frame = 2
Query:   74 SFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            SF  A++++  +   +     E  VL E  G   ++TLNRP+ LN +S  ++  +   L+ WE+D    L+I+KG G +AF AGGD+K   + + ++ +  + ++R  Y L + I + +K  VAL  GITMGGG  L V  +F V TE+++F+ PE  IG   D G  +   RL G LG FLALT
Sbjct:   15 SFRRASVILQHLRMSMHTEAAE--VLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALT 197          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.033e-24
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  164 GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            G   ++TLNRP+ LN ++  ++  +   L+ WE+D    LVI+KG G +AF AGGD++   D     D   +  +R  Y L + I T KK  VA+  GITMGGG  L V   F V +EKT+F+ PE +IG   D G  +   RL G LG +LALT
Sbjct:   43 GCAGVITLNRPKALNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAVTDAGKVGDRLAQDFFREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRLTGKLGLYLALT 197          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.957e-22
Identity = 68/169 (40.24%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  146 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLA-EYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRN------SKDSCLEVVY--RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT 622
            VL E+ G    V LNRP+ LN ++  +V +L  +YLE   K D   ++++KG G +AF AGGD++  YD +       SK + +  ++    Y L + I T    QV++ +G  MGGG  L V  KF V TE TVF+ PE  IGF  D G S+   RLP + G +LALT
Sbjct:   25 VLFEKKGKCLKVLLNRPKALNALNPNMVKILTPKYLEMKTKKDGEGVIVMKGAGEKAFCAGGDIRAIYDYKQLNEEQKSKTNDIGDLFFREEYILNNLIGTNPIAQVSIYNGFAMGGGIGLSVHGKFRVATENTVFAMPETGIGFFCDVGGSYFLPRLPNNYGMYLALT 193          
The following BLAST results are available for this feature:
BLAST of FC921681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HIBCH_BOVIN2.454e-2938.663-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE7.141e-2943.483-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_HUMAN3.544e-2838.503-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO1.347e-2737.443-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_CHICK8.729e-2742.863-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR1.140e-2644.523-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT5.658e-2637.973-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE4.790e-2537.843-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA9.033e-2441.943-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI4.957e-2240.243-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC32108B02EF RVDevelopN Citrus clementina cDNA clone C32108B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921681 ID=FC921681; Name=FC921681; organism=Citrus clementina; type=EST; length=622bp
GATCTTGTCTCTCTCTTCATTGGACAGACTGTTGTTTAACAAAACCTGCA
AGTTCCTCTCTGTTCTTTTTCTTAGCTTTGAATCAGCTAACCTACTAATT
GACTAAATGGCGCAAGGTGTTGTTAAGAACCCAGATGAGCAGGTTGTTCT
TGGAGAAGAAATAGGCAATGTGAGACTGGTCACCTTAAACCGGCCTCGCC
AATTGAATGTCATCTCATCTAAAGTGGTGTCTCTATTGGCAGAATACTTG
GAAAAATGGGAAAAAGATGACCGAGCTAAGCTTGTAATAGTCAAGGGAGT
TGGCCGAGCTTTTTCTGCTGGTGGGGATTTGAAAATGTTTTATGATGGGA
GGAACTCAAAGGATTCCTGCCTCGAAGTGGTCTATAGAATGTATTGGCTT
TGCCATCACATTCATACCTATAAGAAAACCCAGGTAGCTCTTGCTCATGG
AATTACAATGGGAGGAGGCGCGTCTTTGATGGTTCCTCTGAAATTCTCAG
TTGTCACGGAAAAAACTGTTTTTTCCACTCCAGAAGCAAGTATTGGGTTT
CATACTGATTGTGGTTTCTCATTCATCCATTCTCGTCTCCCTGGACATTT
AGGGGAATTCCTGGCCTTAACT
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