FC921685

Overview
NameFC921685
Unique NameFC921685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921685 vs. ExPASy Swiss-Prot
Match: SURE_DESHY (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain Y51) GN=surE PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.297e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  282 KSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 476
            KS +GHS+TL E + ++   ++  T Y VSG P DCV LA+ G++    KP LVISGIN G + G
Sbjct:   39 KSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSII--PKPDLVISGINNGPNLG 101          

HSP 2 Score: 30.0314 bits (66), Expect = 2.297e-12
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2
Query:  113 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 220
            +L+TN DG  +PGL  L   L   G Y+V + AP S
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDS 37          
BLAST of FC921685 vs. ExPASy Swiss-Prot
Match: SURE_DESHD (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=surE PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.297e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  282 KSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 476
            KS +GHS+TL E + ++   ++  T Y VSG P DCV LA+ G++    KP LVISGIN G + G
Sbjct:   39 KSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSII--PKPDLVISGINNGPNLG 101          

HSP 2 Score: 30.0314 bits (66), Expect = 2.297e-12
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 2
Query:  113 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 220
            +L+TN DG  +PGL  L   L   G Y+V + AP S
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDS 37          
BLAST of FC921685 vs. ExPASy Swiss-Prot
Match: SURE_DESAA (5'-nucleotidase surE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 9.387e-12
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 3
Query:  276 RDKSVSGHSVTLRETI-AVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 476
            R++S   H++TL   + A S    NG  ++ V+GTP DCV L +   L    KP LV+SGIN G + G
Sbjct:   36 RERSAIAHAITLLTPLRAFSQTNGNGIPSWAVNGTPADCVKLGVLELL--GEKPDLVVSGINPGPNVG 101          

HSP 2 Score: 31.9574 bits (71), Expect = 9.387e-12
Identity = 17/34 (50.00%), Postives = 21/34 (61.76%), Query Frame = 2
Query:  113 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAP 214
            +LVTN DGI  PGL  L + L R+  + V V AP
Sbjct:    3 ILVTNDDGIHHPGLAALRDGLARD--HRVQVVAP 34          

HSP 3 Score: 30.0314 bits (66), Expect = 9.387e-12
Identity = 17/55 (30.91%), Postives = 31/55 (56.36%), Query Frame = 1
Query:  490 VAGAREALICGVPSLSISLNWKKDESQESDFKDAVSVCLPLI-NAATRDIGKGIF 651
            V+ AREA + G+P++++S++        + F DA      L+ + A R + KG+F
Sbjct:  110 VSAAREAALLGIPAIAVSVS----NPYGTHFSDAARFMQDLVADVAERGLPKGVF 160          
BLAST of FC921685 vs. ExPASy Swiss-Prot
Match: SURE2_CHLCV (5'-nucleotidase surE 2 OS=Chlamydophila caviae GN=surE2 PE=3 SV=2)

HSP 1 Score: 51.9878 bits (123), Expect = 2.596e-11
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  279 DKSVSGHSVTLRETIAVSSAE--INGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHM 485
            ++S    ++T  E + +   +  +  A A+ VSGTPVDCV +AL+  LF    P LV+SGINRGS+ G H+
Sbjct:   50 EQSAKSMAMTFHEPVILQPYDYPLPVAGAWSVSGTPVDCVRIALA-YLFKDELPDLVLSGINRGSNAGRHV 119          

HSP 2 Score: 32.7278 bits (73), Expect = 2.596e-11
Identity = 13/36 (36.11%), Postives = 25/36 (69.44%), Query Frame = 2
Query:  113 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 220
            +L+TN DGI +PG+  LV  L++    ++++ AP++
Sbjct:   14 ILLTNDDGIFAPGMTLLVSNLLKADFADLYIVAPKT 49          

HSP 3 Score: 23.483 bits (49), Expect = 2.596e-11
Identity = 10/31 (32.26%), Postives = 18/31 (58.06%), Query Frame = 1
Query:  490 VAGAREALICGVPSLSISLNWKKDESQESDF 582
            +  A E+ +CGVP++++S        QE +F
Sbjct:  125 LGAAIESTLCGVPAVALSQEGNFSFFQEKNF 155          
BLAST of FC921685 vs. ExPASy Swiss-Prot
Match: SURE_FLAPJ (5'-nucleotidase surE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 5.268e-11
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 3
Query:  282 KSVSGHSVTLRETIAVS--SAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSS 470
            +S  GH++T+  T+ ++  SAE    T Y  SGTPVDCV LA++  L    KP L +SG+N GS+
Sbjct:   41 QSAMGHAITINSTLHLNKISAENAAVTEYSCSGTPVDCVKLAVNEIL--KQKPDLCVSGVNHGSN 103          

HSP 2 Score: 35.039 bits (79), Expect = 5.268e-11
Identity = 19/40 (47.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  101 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 220
            SKP++LVTN DGI +PG+  L+  +   G   V V AP S
Sbjct:    2 SKPLILVTNDDGISAPGIRSLIAVMQEIG--TVVVVAPDS 39          
BLAST of FC921685 vs. ExPASy Swiss-Prot
Match: SURE_RUBXD (5'-nucleotidase surE OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=surE PE=3 SV=2)

HSP 1 Score: 46.2098 bits (108), Expect = 9.378e-11
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 3
Query:  276 RDKSVSGHSVTLRETIAVSSAEI-NGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 476
            R++S  G S+T    + V    + +G   Y  SGTPVDCV L   G +  + +P +V+SGIN G + G
Sbjct:   36 RNRSGVGRSITFGAELYVEERRMADGGVGYACSGTPVDCVRLVALGMVEGF-RPDIVVSGINHGENLG 102          

HSP 2 Score: 33.113 bits (74), Expect = 9.378e-11
Identity = 24/72 (33.33%), Postives = 36/72 (50.00%), Query Frame = 1
Query:  490 VAGAREALICGVPSLSISLN----WK-KDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVESRHL 690
            VAGA EA++ GVP +++SL+    W   D  +E  F+        L   A RD+     P   +LNV + +L
Sbjct:  111 VAGALEAIVIGVPGIAVSLSTGRPWHGADGREELHFEPVARFTARLAGLALRDL-----PPGRILNVNAPNL 177          

HSP 3 Score: 26.9498 bits (58), Expect = 9.378e-11
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  113 LLVTNGDGIESPGLVYLVEALVREG 187
            +++TN DGIE+PGL+    AL   G
Sbjct:    3 IVLTNDDGIEAPGLLAARRALEEVG 27          
BLAST of FC921685 vs. ExPASy Swiss-Prot
Match: SURE_BREBN (5'-nucleotidase surE OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=surE PE=3 SV=1)

HSP 1 Score: 43.1282 bits (100), Expect = 9.378e-11
Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 3
Query:  279 DKSVSGHSVTLRETIAVSSAEING--ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 476
            +KS  GH +T R  ++    +  G    A+ V+G P DCV  A         KP +V SGIN G++ G
Sbjct:   39 EKSGVGHGITYRSALSPEQRDFYGMPVKAWAVNGNPADCVKAAYHLLFEHGKKPDIVFSGINVGTNLG 106          

HSP 2 Score: 33.113 bits (74), Expect = 9.378e-11
Identity = 22/71 (30.99%), Postives = 35/71 (49.30%), Query Frame = 1
Query:  481 TCVVAGAREALICGVPSLSISL-NWKKDESQESDFKDAVSVCLPLINAATRDIGKGIFPRSCLLNVESRHL 690
            TC  +GAREA+I GVP +++S  NW      + ++ D V +  PL+   +    KG        N+   H+
Sbjct:  114 TC--SGAREAVILGVPGVALSYDNW----FDQDNYGDVVEMIRPLVKEFSDRAIKGELASEVFWNINIPHV 178          

HSP 3 Score: 30.0314 bits (66), Expect = 9.378e-11
Identity = 16/34 (47.06%), Postives = 22/34 (64.71%), Query Frame = 2
Query:  113 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAP 214
            +LVTN DGI++ G+  LVEAL+      V + AP
Sbjct:    3 ILVTNDDGIDALGIKRLVEALLTLEGAEVSIVAP 36          
The following BLAST results are available for this feature:
BLAST of FC921685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SURE_DESHY2.297e-1247.695'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_DESHD2.297e-1247.695'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_DESAA9.387e-1241.185'-nucleotidase surE OS=Desulfatibacillum alkenivo... [more]
SURE2_CHLCV2.596e-1142.255'-nucleotidase surE 2 OS=Chlamydophila caviae GN=... [more]
SURE_FLAPJ5.268e-1144.625'-nucleotidase surE OS=Flavobacterium psychrophil... [more]
SURE_RUBXD9.378e-1138.245'-nucleotidase surE OS=Rubrobacter xylanophilus (... [more]
SURE_BREBN9.378e-1135.295'-nucleotidase surE OS=Brevibacillus brevis (stra... [more]
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Properties
Property NameValue
Genbank descriptionC32108B06EF RVDevelopN Citrus clementina cDNA clone C32108B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921685 ID=FC921685; Name=FC921685; organism=Citrus clementina; type=EST; length=694bp
GGAAGATGATGGTGATGATGGCACCAGTAAGCAATCAAACGAAGAGGCCA
ATGAATCAACGGAGCCCTCTACTTCTGATTCGACGGAGAATGTTGATAGT
TCAAAGCCTGTGCTTTTGGTCACAAATGGGGATGGAATTGAGTCTCCTGG
CCTTGTTTATCTTGTTGAAGCTTTGGTTCGTGAAGGGCTCTACAATGTCC
ACGTTTGCGCTCCTCAATCGTTATTTGAATTTTGGGAGTCTTTTCTGATT
TGCTACTTTGTGAATGAACTGCTTTAGGGACAAATCAGTGTCAGGTCATT
CTGTGACACTCCGAGAAACGATTGCTGTAAGTTCTGCTGAAATTAATGGT
GCCACAGCGTATGAAGTTTCAGGGACTCCTGTGGATTGTGTGTCATTAGC
ACTATCTGGGGCACTATTTTCTTGGTCAAAGCCTTTGCTGGTAATTAGTG
GAATCAACCGAGGTTCAAGCTGTGGTCATCACATGTGTTGTTGCCGGAGC
CAGAGAGGCATTAATTTGTGGTGTACCTTCTCTGTCCATATCCCTAAACT
GGAAGAAAGATGAAAGCCAAGAGAGTGATTTCAAGGATGCAGTCAGTGTC
TGTTTACCTTTGATAAATGCTGCTACTAGAGATATTGGAAAGGGGATTTT
TCCAAGGAGTTGCTTGCTCAATGTAGAATCCCGACATCTCCATT
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