FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:610..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_ARATH (50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 149/196 (76.02%), Postives = 165/196 (84.18%), Query Frame = 1
Query:  103 LSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMXXXXXXXXXXXXXXXXLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKRXTLII 690
            LSS +NVS+ F   K   SPLLSSTPRFLTVIAM                +IKLALEAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADKAGY+IPVEITV+DD+SFTFILKTPPASVLLLKAAGVEKGSKDP+Q +VG ITI+QLR IA EKLPDLNCT+IESAMRIIAGTAANMGIDIDPP+LE K+  +++
Sbjct:   31 LSSKANVSVQFLGKK--QSPLLSSTPRFLTVIAMAPPKPGGKAKKVVG--VIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKKAVLL 222          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_SPIOL (50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.270e-70
Identity = 141/202 (69.80%), Postives = 166/202 (82.18%), Query Frame = 1
Query:   82 LFPSAINLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMXXXXXXXXXXXXXXXXLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKRXTLI 687
            L PS+++LSSN   SL F ++K+  SP  S++ R L+++AM                +IKLALEAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADK G+VIPVEITV+DD+SFTFILKTPPASVLLLKA+G EKGSKDP+ ++VGKITI+QLR IATEKLPDLNCT+IESAMRIIAGTAANMGIDIDPP+L  K+  +I
Sbjct:   27 LTPSSLSLSSNPRNSLQFLNSKLFLSPP-STSHRRLSIVAMAPKPGKAKKVIG----VIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEVI 223          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_GUITH (50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.490e-50
Identity = 97/132 (73.48%), Postives = 114/132 (86.36%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLALEAGKATPAPPVGPALG +GVNI+ FCKDYNARTADKAG +IPVEITVY+D+S+TF+LKTPPASVLL KAAGV+KGS +PK+ QVG +T +Q+  IA  KLPDLN   +ESA+RII GTA NMGI +
Sbjct:    8 IIKLALEAGKATPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITVYEDKSYTFVLKTPPASVLLAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTRRLESAIRIIEGTAKNMGIGV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNR3 (50S ribosomal protein L11 OS=Synechococcus sp. (strain RCC307) GN=rplK PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.614e-49
Identity = 96/132 (72.73%), Postives = 112/132 (84.85%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL++KAAG+EKGS +  +  VG IT  QL  IA  KLPDLNC+S+ESAMRII GTA NMG+ +
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLIVKAAGIEKGSGESAKGSVGSITRAQLEEIANTKLPDLNCSSVESAMRIIEGTARNMGVAV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROM5 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplK PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.614e-49
Identity = 97/132 (73.48%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +  +  VG I+  QL  IA  KLPDLNCTSIESAM++I GTA NMGI I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESSKGSVGNISKSQLEEIAKTKLPDLNCTSIESAMKVIEGTARNMGISI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CYAP4 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplK PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.614e-49
Identity = 94/132 (71.21%), Postives = 113/132 (85.61%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLA+ AGKA PAPP+GPALG  GVNIM FCK+YNARTAD+AG VIPVEI+VY+DRSFTFILKTPPASVL+ KAAG+E+GS +P +++VGKIT  QLR IA  KLPDLN   +++AMRI+AGTA NMG+ I
Sbjct:    8 IIKLAITAGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQAGLVIPVEISVYEDRSFTFILKTPPASVLIQKAAGIERGSGEPNKKKVGKITTAQLREIAQTKLPDLNANDVDAAMRIVAGTARNMGVTI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNS3 (50S ribosomal protein L11 OS=Synechococcus sp. (strain CC9311) GN=rplK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.753e-49
Identity = 96/132 (72.73%), Postives = 110/132 (83.33%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAGYVIPVEI+V++DRSFTFI KTPPASVL+ KAAG++KGS +  +  VG I   QL  IA  KLPDLNCTS+ESAMR+I GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGYVIPVEISVFEDRSFTFITKTPPASVLITKAAGIQKGSGESAKGSVGSINRSQLEEIAKTKLPDLNCTSVESAMRVIEGTARNMGVAI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNPW (50S ribosomal protein L11 OS=Synechococcus sp. (strain WH7803) GN=rplK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.753e-49
Identity = 98/132 (74.24%), Postives = 110/132 (83.33%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS +  +  VG I   QL  IA  KLPDLNCTSIESAMRII GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGESAKGSVGSIKRSQLEEIAKTKLPDLNCTSIESAMRIIEGTARNMGVAI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNE7 (50S ribosomal protein L11 OS=Synechococcus elongatus (strain PCC 7942) GN=rplK PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 96/132 (72.73%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNART DK G VIPVEI+V++DRSFTFILKTPPASVL+ KAAG+E+GS +P + +VGKIT  QLR IA  KLPDLN  ++E+AMRI+ GTA NMG+ I
Sbjct:    8 LIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKVGLVIPVEISVFEDRSFTFILKTPPASVLIAKAAGIERGSGNPNKTKVGKITTAQLREIAETKLPDLNTKNVEAAMRIVEGTARNMGVTI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROMP (50S ribosomal protein L11 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplK PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 95/132 (71.97%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG+VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKG+ +  +  VG I+  QL  IA  KLPDLNCTSIESAM++I GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGAGESSKGSVGNISKSQLEEIAKTKLPDLNCTSIESAMKVIEGTARNMGVSI 139          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK11_ARATH7.686e-7676.0250S ribosomal protein L11, chloroplastic OS=Arabid... [more]
RK11_SPIOL1.270e-7069.8050S ribosomal protein L11, chloroplastic OS=Spinac... [more]
RK11_GUITH2.490e-5073.4850S ribosomal protein L11, chloroplastic OS=Guilla... [more]
RL11_SYNR31.614e-4972.7350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_PROM51.614e-4973.4850S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_CYAP41.614e-4971.2150S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_SYNS32.753e-4972.7350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNPW2.753e-4974.2450S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNE74.696e-4972.7350S ribosomal protein L11 OS=Synechococcus elongat... [more]
RL11_PROMP4.696e-4971.9750S ribosomal protein L11 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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