FC923166

Overview
NameFC923166
Unique NameFC923166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14233 contig Ccv1_Contig14233:137..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.873e-42
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 3
Query:   15 KSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            KSNQYPNTSL+QVEGVNT EEV+WY GKR+AYIYKAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:   25 KSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.606e-42
Identity = 78/88 (88.64%), Postives = 82/88 (93.18%), Query Frame = 3
Query:   15 KSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            KSNQYPNTSL+Q+EGVNT+EEV WY GKR+AYIYKAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:   25 KSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.127e-41
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 3
Query:   15 KSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            KSNQYPNTSLIQ+EGVNT+EEV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:   24 KSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.472e-41
Identity = 78/88 (88.64%), Postives = 82/88 (93.18%), Query Frame = 3
Query:   15 KSNQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            KSNQYPNTSL+Q+EGVNT+EEV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:   24 KSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.642e-24
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 3
Query:   30 PNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            PN SLI++EGV T +E  +Y GKR+AY+Y+A  +  GS  R +WGKV R+HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:   25 PNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 8.113e-24
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 3
Query:   30 PNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            PN SLI++EGV T ++  +Y GKR+AY+Y+A  +  GS  R +WGKV R+HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:   25 PNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe GN=rpl33a PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 3
Query:   27 YPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            +P TSL+++EG ++KEE  +Y GKR+ ++YK+     GS  R IWG V+R HGNSGVVRA+F  NLPPK+ G  +RV +YPSN+
Sbjct:   25 HPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.452e-22
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 3
Query:   21 NQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            NQ  +T+L++VEGV ++ EV +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF SNLPPK++G R+RV +YPS +
Sbjct:   20 NQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.918e-22
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 3
Query:   27 YPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            +P TS++++EG ++KEE  +Y GKR+ Y+YK+     GS  R IWG +AR HGNSG VRA+F  NLP K+ G  +RV +YPSNI
Sbjct:   25 HPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108          
BLAST of FC923166 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.692e-21
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 3
Query:   21 NQYPNTSLIQVEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 278
            NQ  +T+L+++EGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:   20 NQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of FC923166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
R35A1_ARATH3.873e-4289.7760S ribosomal protein L35a-1 OS=Arabidopsis thalia... [more]
R35A3_ARATH6.606e-4288.6460S ribosomal protein L35a-3 OS=Arabidopsis thalia... [more]
R35A2_ARATH1.127e-4189.7760S ribosomal protein L35a-2 OS=Arabidopsis thalia... [more]
R35A4_ARATH1.472e-4188.6460S ribosomal protein L35a-4 OS=Arabidopsis thalia... [more]
RL33B_YEAST3.642e-2459.0460S ribosomal protein L33-B OS=Saccharomyces cerev... [more]
RL33A_YEAST8.113e-2457.8360S ribosomal protein L33-A OS=Saccharomyces cerev... [more]
RL33A_SCHPO1.530e-2253.5760S ribosomal protein L33-A OS=Schizosaccharomyces... [more]
RL35A_ICTPU4.452e-2254.9560S ribosomal protein L35a OS=Ictalurus punctatus ... [more]
RL33B_SCHPO9.918e-2252.3860S ribosomal protein L33-B OS=Schizosaccharomyces... [more]
RL35A_XENLA1.692e-2152.7560S ribosomal protein L35a OS=Xenopus laevis GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionC31701G09EF StrClemenN Citrus clementina cDNA clone C31701G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923166 ID=FC923166; Name=FC923166; organism=Citrus clementina; type=EST; length=472bp
GGGATACAAAGGTCAAATCAAACCAGTATCCAAACACATCACTGATTCAG
GTCGAGGGAGTGAACACAAAGGAAGAGGTGGCGTGGTACTGCGGCAAGCG
TTTGGCTTACATTTACAAGGCCAAGACTAAGAAGAACGGATCCCACTACC
GTTGTATTTGGGGAAAAGTTGCCAGATCTCACGGTAACAGCGGCGTCGTT
CGCGCCAAGTTCAAGTCCAATCTCCCTCCCAAATCCATGGGAGATAGAGT
TAGGGTTTTCATGTATCCCAGCAACATATGAGCAGCATGGTTCGAGAAGC
TACTCGATCAACAAGTGAAATGTGCCTTCTGAATTTGGGATTTATTCGCC
TAACATTTATGTTGCAAGATTTTGGAGTTGGGAGTTATACTGGCTAGATG
TTTTGGCTTTTGCTACTGTTAGTGTGGATTTTGGAACATTAATTTTAATG
TTAATGCTTAGTTTTTTGTTTT
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