FC923167

Overview
NameFC923167
Unique NameFC923167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14397 contig Ccv1_Contig14397:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. GN=fabZ PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.394e-24
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  456 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM 677
            P V    QI +ILPHR+PFLLVDRV+EY PG  AV +KNVT N+ FF GHFP RPIMPGVL+VEAMAQ+GG+V+
Sbjct:   23 PPVFTTEQILEILPHRYPFLLVDRVVEYQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVEAMAQIGGIVL 96          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_THEEB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 49/78 (62.82%), Postives = 65/78 (83.33%), Query Frame = 3
Query:  459 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEW 692
            TV+ + +++ +LPHR+PFLLVDR+I+Y P   AV +KNVTIN+ FF GHFP RPIMPGVL+VEA+AQVGG+V++Q  W
Sbjct:   11 TVLTVTELQQLLPHRYPFLLVDRIIDYVPEKYAVGLKNVTINEPFFQGHFPGRPIMPGVLIVEALAQVGGVVLMQMNW 88          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain JA-3-3Ab) GN=fabZ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  456 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM 677
            P V   +QI +ILPHR+PFLLVDRV+EY PG  AV +KNVT N+ FF GHFP RPIMPGVL+VEAMAQ+GG+V+
Sbjct:   23 PPVFTTDQILEILPHRYPFLLVDRVVEYQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVEAMAQLGGIVL 96          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_SYNY3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechocystis sp. (strain PCC 6803) GN=fabZ PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 3
Query:  459 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 683
            T   I +I D+LPHR+PF LVDR+I++ PG  AV +KNVTIN+ FFPGH P+RPIMPGVL+VE+MAQVGG+++ Q
Sbjct:   22 TQFTIQEISDLLPHRYPFALVDRIIDFQPGKCAVGLKNVTINEPFFPGHIPDRPIMPGVLIVESMAQVGGVILTQ 96          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_SYNS9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9902) GN=fabZ PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  462 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 683
            V+   QI  +LPHR+PF LVDRVI Y PGVSA AIKN+T+N+  F GHFPERP+MPGVL+VEAMAQVGGL++ Q
Sbjct:   10 VLTSEQIAGLLPHRYPFALVDRVIAYEPGVSATAIKNITMNEPQFQGHFPERPLMPGVLIVEAMAQVGGLIVAQ 83          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_MICAN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Microcystis aeruginosa (strain NIES-843) GN=fabZ PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  459 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 683
            T   + +IR +LPHR+PF LVDR+I+Y PG  AV +KNVTIN+ FFPGH P RP+MPGVL+VE+MAQVGG+++ Q
Sbjct:   17 TTFTVEEIRQLLPHRYPFALVDRIIDYVPGQKAVGLKNVTINEPFFPGHIPNRPLMPGVLIVESMAQVGGVILTQ 91          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_GEOMG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=fabZ PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  459 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 674
            TV DIN+I  ILPHR+PFLLVDR++E+ PG   V IKNVTIN+ FF GHFP  PIMPGVL+VEAMAQVGG++
Sbjct:    3 TVFDINEIMKILPHRYPFLLVDRIVEHVPGERIVGIKNVTINEPFFQGHFPGHPIMPGVLIVEAMAQVGGIL 74          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_ANAVT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fabZ PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  459 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 683
            T     +I+ +LPHR+PFLLVD++I+Y PG  AV IKNVTIN+  F GHFP+RP+MPGVL+VEAMAQVGG+VM Q
Sbjct:   23 TTFTSEEIQKLLPHRYPFLLVDKIIDYTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVEAMAQVGGIVMTQ 97          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_ANASP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena sp. (strain PCC 7120) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  459 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 683
            T     +I+ +LPHR+PFLLVD++I+Y PG  AV IKNVTIN+  F GHFP+RP+MPGVL+VEAMAQVGG+VM Q
Sbjct:   29 TTFTSEEIQKLLPHRYPFLLVDKIIDYTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVEAMAQVGGIVMTQ 103          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_SYNSC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9605) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.457e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3
Query:  462 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 683
            V+   QI  +LPHR+PF LVDRVI ++PGVSA AIKNVT+N+  F GHFPERP+MPGVL+VEAMAQVGGL++ Q
Sbjct:   10 VLTSEQIAGLLPHRYPFALVDRVIAHDPGVSATAIKNVTMNEPQFQGHFPERPLMPGVLIVEAMAQVGGLIVTQ 83          
The following BLAST results are available for this feature:
BLAST of FC923167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SYNJB2.394e-2468.92(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEEB3.127e-2462.82(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNJA3.127e-2468.92(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNY31.188e-2364.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNS91.552e-2368.92(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MICAN1.552e-2362.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOMG1.552e-2370.83(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANAVT2.647e-2365.33(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANASP2.647e-2365.33(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNSC3.457e-2368.92(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionC31701G10EF StrClemenN Citrus clementina cDNA clone C31701G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923167 ID=FC923167; Name=FC923167; organism=Citrus clementina; type=EST; length=723bp
GCTTTACACAGTACAACTTTTGCCAACACCCAATCCCATCATTGGTCTCT
CCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAACTGT
CATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTTATTA
GTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCAGTTC
TTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATTCACT
TTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTTTTCTATTTCAA
AACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACAACAA
CAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGGACGC
TGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTACCAGG
CATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCCACAC
AGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAGGAGT
TTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTTCCTG
GCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGAGGCA
ATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAGTGGGAGCTCTC
GTGAAAATTTCTCTTTGCTGAAT
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