FC923176

Overview
NameFC923176
Unique NameFC923176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.879e-26
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  112 EPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGY--CVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLV 426
            EP +G+EF+SEEAAK FY+ YARR+GF  RV S RRS RDG I+ R+  C KEG+      R K   +++PR  TR GCKA + VK   SGKW+++ FVK+HNH LV
Sbjct:   72 EPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178          
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 60/178 (33.71%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  103 SIREPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLVVAPREARQTMDEKD--------KKIQELTVELRNKKRLCALY---QEQLTTFMKVVEVHSDHLSKKVQNV 603
            ++ E   GM+F+S+EAA  FY EYAR VGF + + + RRS+R G+ +  ++ C++ G     + +      PR   + GCKA +H+K  +  KWVI  FVKEHNH   + P +   ++  K+        KK  +L +E  + K L   +   Q++   F   V+  SD   K+V+NV
Sbjct:   34 TVSELRNGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFG----TKREKATAINPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHE--ICPDDFYVSVRGKNKPAGALAIKKGLQLALEEEDLKLLLEHFMEMQDKQPGFFYAVDFDSD---KRVRNV 202          
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query:   94 EGDSIREPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLVVAPREARQT 453
            EGDS  EP  G+EFD+ E A+ +Y+ YA R GF +R     RS  DG + +RR  C+KEG+              + ++R GC A I V+   +GKWV+ +  KEHNH L     EA+ T
Sbjct:   21 EGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF--------------QLNSRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDLGGHIEEAQTT 126          

HSP 2 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 1
Query:  112 EPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLVVAPREA 444
            EP  G+EF+S   A  FY  YA  VGF +R+    RS+ DG I +RR  C+KEG+              +  +R GC A + +K   SG W++ +  K+HNH L    + A
Sbjct:  189 EPYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGF--------------QHPSRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEPGKKNA 285          
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   91 FEGDSIREPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLVVA 432
            F GD   EP  G++FD+ EAA IFY EYA+ +GF   + + RRS++    +  +  C++ G         G   +     +  CKA +HVK    GKW+I +FVK+HNH L+ A
Sbjct:   43 FSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESS-GSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELLPA 155          
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   94 EGDSIREPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPL 423
            EG S  EP  G+EFD+ E A+ FY+ YA R GF +R     RS  DG + +RR  C+KEG+              + ++R GC A I V+   +GKWV+ +  KEHNH L
Sbjct:   36 EGGSGVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF--------------QLNSRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131          

HSP 2 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = 1
Query:  112 EPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPL 423
            EP  G+EF S   A  FY  YA  VGF +R+    RS+ DG I +RR  C++EG+              +  +R GC A + +K   SG W++ +  K+HNH L
Sbjct:  210 EPYAGLEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGF--------------QHPSRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDL 299          
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  106 IREPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPL 423
            I EPC GMEF+SE+ AK FYDEY+R++GF  +++       DG +  R   C+               ++ +    E C AM+ ++     KWV+TKFVKEH H L
Sbjct:   46 IAEPCVGMEFNSEKEAKSFYDEYSRQLGFTSKLL----PRTDGSVSVREFVCSSSS------------KRSKRRLSESCDAMVRIELQGHEKWVVTKFVKEHTHGL 135          
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 57/187 (30.48%), Postives = 83/187 (44.39%), Query Frame = 1
Query:   34 DSDEGAGAVEGSAGRQLIIFEGDSIREPCEGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEG----YCVSIRGKFGPVRKPRPSTREG--------CKAMIHVKFDKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKI-QELTVELRNKKRLCALYQEQLTTFMK 555
            D   G G   G    +L+ +      EP  GMEF+S   A  FY EY+R +GF   + + RRS+     +  +  C++ G    Y  S         K  P    G        CKA +HVK    GKWVI  FV+EHNH L+ A     Q + E+ +KI   +  +    K + +L  +  ++F K
Sbjct:   47 DDSVGMGVPTG----ELVEYTEGMNLEPLNGMEFESHGEAYSFYQEYSRAMGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFVREHNHELLPA-----QAVSEQTRKIYAAMAKQFAEYKTVISLKSDSKSSFEK 224          
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  127 MEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKK-IQELTVELRNKK 510
            MEF++ E A +FY +YA+ VGF    +S RRS      +  +  C + G     + +      PR S + GCKA +HVK    GKW +  FVKEHNH L+  P +A      ++ + ++     LR KK
Sbjct:    1 MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGS----KQQSDDAINPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLL--PEQAHYFRSHRNTELVKSNDSRLRRKK 123          
BLAST of FC923176 vs. ExPASy Swiss-Prot
Match: FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  121 EGMEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNK--------------EGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKIQEL 486
            EG EF+S+E A  FY EYA  VGF   + + RRS   G+ +  +  C +              +G+ +    K G +   R S++  CKA +HVK  + G+WV+   VKEHNH +     ++ + +  + +K+++L
Sbjct:   23 EGREFESKEEAFEFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKEDIDTGLGTDGFNIPQARKRGRIN--RSSSKTDCKAFLHVKRRQDGRWVVRSLVKEHNHEIFTGQADSLRELSGR-RKLEKL 155          
The following BLAST results are available for this feature:
BLAST of FC923176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FRS5_ARATH5.879e-2654.21Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FRS2_ARATH2.924e-1733.71Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis tha... [more]
FRS7_ARATH1.451e-1640.00Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis tha... [more]
FAR1_ARATH3.233e-1637.72Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FRS12_ARATH1.605e-1540.91Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis th... [more]
FRS3_ARATH1.774e-1437.74Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis tha... [more]
FHY3_ARATH3.952e-1430.48Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidops... [more]
FRS4_ARATH1.502e-1334.88Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis tha... [more]
FRS1_ARATH4.370e-1330.88Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC31701H07EF StrClemenN Citrus clementina cDNA clone C31701H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923176 ID=FC923176; Name=FC923176; organism=Citrus clementina; type=EST; length=734bp
GAAGGTTCCTTAATTCTGATTCTTCAATCCATGGATTCAGATGAGGGAGC
TGGAGCAGTAGAGGGCTCTGCTGGAAGACAGTTGATTATATTCGAAGGAG
ATTCAATTAGAGAGCCATGTGAGGGAATGGAATTTGATTCAGAAGAGGCT
GCCAAGATATTCTATGATGAATATGCACGGAGAGTAGGGTTTGTCATGCG
TGTGATGTCTTGTCGTCGTTCAGAAAGAGATGGTAGGATTCTTGCACGTA
GACTTGGATGTAATAAAGAGGGTTATTGTGTTAGTATCCGAGGGAAATTT
GGGCCAGTTCGAAAGCCTAGACCGAGCACAAGAGAAGGTTGTAAGGCAAT
GATTCATGTAAAGTTTGATAAATCTGGAAAGTGGGTGATAACTAAATTTG
TAAAGGAACACAATCATCCACTTGTGGTGGCGCCGCGTGAAGCTCGTCAG
ACTATGGATGAAAAAGATAAGAAGATTCAGGAATTGACAGTAGAGCTTCG
AAATAAGAAACGGCTTTGTGCACTGTATCAAGAACAGCTAACAACTTTTA
TGAAGGTTGTGGAAGTGCATAGTGACCACCTATCAAAGAAAGTTCAGAAT
GTAATCAACAATCTCAAAGAATTTGAATCTATAGAGAAGGAGCTTTCGCG
CAACAGATAGCCATGAACTCCTGAAGTGGCTACTCCAGCGCCCACTTAAG
TGGTAGTACATTTTTTTTTTCCCTGTACATTTCA
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