FC923177

Overview
NameFC923177
Unique NameFC923177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923177_ssr206 microsatellite FC923177_ssr206:206..215. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14400 contig Ccv1_Contig14400:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC1_ARATH (Sucrose transport protein SUC1 OS=Arabidopsis thaliana GN=SUC1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.171e-34
Identity = 57/87 (65.52%), Postives = 63/87 (72.41%), Query Frame = 1
Query:  208 LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVK 468
            LSLLTPYVQLLGIPHKWSSLIWLCGP+SGMIVQPIVGFHSD C+S+FGRRRP                 YAAD G+  GD + + VK
Sbjct:   51 LSLLTPYVQLLGIPHKWSSLIWLCGPVSGMIVQPIVGFHSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADFGYKMGDKLEEKVK 137          

HSP 2 Score: 45.4394 bits (106), Expect = 1.171e-34
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 2
Query:   83 PTKNQSSIELRQXXXXXXXX-MWKIVMVASIAAGVQFGWALQLSLF*P 223
            PTK+ +++E +          + KI+ VASIAAGVQFGWALQLSL  P
Sbjct:    9 PTKDAAALETQSPEDFDQPSPLRKIISVASIAAGVQFGWALQLSLLTP 56          

HSP 3 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  466 KRLWGVVNFLLAVSLAFTFLITKLAESNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPSAITFSVPFAMASIFS 699
            KRLWG+VNF+LA  LA T L+TK AE +R++     G      P   VK GAL++F VLGIP AITFS PFA+ASIFS
Sbjct:  363 KRLWGIVNFILAAGLAMTVLVTKFAEDHRKTAGDLAG------PSASVKAGALSLFAVLGIPLAITFSTPFALASIFS 434          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC5_ARATH (Sucrose transport protein SUC5 OS=Arabidopsis thaliana GN=SUC5 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.790e-33
Identity = 55/87 (63.22%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  208 LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVK 468
            LSLLTPY+QLLGIPHKWSS +WLCGPISGMIVQPIVG+HSD C+SRFGRRRP                 +AAD+GHS GD + + V+
Sbjct:   52 LSLLTPYIQLLGIPHKWSSYMWLCGPISGMIVQPIVGYHSDRCESRFGRRRPFIAAGVALVAVSVFLIGFAADMGHSFGDKLENKVR 138          

HSP 2 Score: 43.5134 bits (101), Expect = 2.790e-33
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:  149 KIVMVASIAAGVQFGWALQLSLF*P 223
            KI+ VASIAAGVQFGWALQLSL  P
Sbjct:   33 KIISVASIAAGVQFGWALQLSLLTP 57          

HSP 3 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  466 KRLWGVVNFLLAVSLAFTFLITKLAESNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPSAITFSVPFAMASIFS 699
            KRLWG VNF+LA+ LA T L+TK AE +R       G      P  G+K G  ++FTVLGIP AIT+S+PFA+ASIFS
Sbjct:  362 KRLWGCVNFILAIGLAMTVLVTKSAEHHREIAGPLAG------PSSGIKAGVFSLFTVLGIPLAITYSIPFALASIFS 433          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC2_ARATH (Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 61/97 (62.89%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  166 VHSSGGAIRVGPAA-LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSV 453
            V S    ++ G A  LSLLTPYVQLLGIPHKW+SLIWLCGPISGM+VQPIVG+HSD C SRFGRRRP                 YAADIGHS GD +
Sbjct:   35 VSSIAAGVQFGWALQLSLLTPYVQLLGIPHKWASLIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYAADIGHSMGDQL 131          

HSP 2 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  466 KRLWGVVNFLLAVSLAFTFLITKLAESNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPSAITFSVPFAMASIFS 699
            KRLWG+VNF+LA+ LA T ++TK AE++RR     GGA     PP  V  GAL +F +LGIP AITFS+PFA+ASIFS
Sbjct:  361 KRLWGIVNFILAICLAMTVVVTKQAENHRRD---HGGAK--TGPPGNVTAGALTLFAILGIPQAITFSIPFALASIFS 433          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC6_ARATH (Putative sucrose transport protein SUC6 OS=Arabidopsis thaliana GN=SUC6 PE=5 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26
Identity = 64/112 (57.14%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  166 VHSSGGAIRVGPAA-LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKRLWGVVNFLL 498
            V S    I+ G A  LSLLTPYVQLLG+PHKWSS IWLCGP+SG++VQP VG+ SD CKSRFGRRRP                 YAAD GHS GD V + VK +  VV F L
Sbjct:   36 VASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAADFGHSMGDKVDEPVK-MRAVVIFAL 146          

HSP 2 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  466 KRLWGVVNFLLAVSLAFTFLITKLAESNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPSAITFSVPFAMASIFS 699
            KRLWG VN +LAV LA T L+TK AE +RR       A  +  P  G++ GAL +F +LGIP AITFS+PFA+ASI S
Sbjct:  358 KRLWGAVNIILAVCLAMTVLVTKKAEEHRRI------AGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIIS 429          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC9_ARATH (Sucrose transport protein SUC9 OS=Arabidopsis thaliana GN=SUC9 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 58/102 (56.86%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  166 VHSSGGAIRVGPAA-LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVK 468
            V S    I+ G A  LSLLTPYVQLLG+PHKWSS IWLCGPISG++VQP VG+ SD CKSRFGRRRP                 +AAD GH+ GD + ++VK
Sbjct:   36 VASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPISGLLVQPTVGYFSDRCKSRFGRRRPFIATGALLVALAVILIGFAADFGHTMGDKLDEAVK 137          

HSP 2 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  466 KRLWGVVNFLLAVSLAFTFLITKLAESNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPSAITFSVPFAMASIFS 699
            KRLWG VN +LAV LA T L+TK AE +R+       A  +  P   ++ GAL++F +LGIP AITFS+PFA+ASI S
Sbjct:  357 KRLWGAVNIILAVCLAMTVLVTKKAEEHRKI------AGRMALPTNAIRDGALSLFAILGIPLAITFSIPFALASIIS 428          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC8_ARATH (Sucrose transport protein SUC8 OS=Arabidopsis thaliana GN=SUC8 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.783e-25
Identity = 62/112 (55.36%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  166 VHSSGGAIRVGPAA-LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKRLWGVVNFLL 498
            V S    I+ G A  LSLLTPYVQLLG+PHKWSS IWLCGP+SG++VQP VG+ SD C SRFGRRRP                 YAAD GHS GD +   VK +  VV F L
Sbjct:   36 VASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADFGHSMGDKIDKPVK-MRAVVIFAL 146          

HSP 2 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  466 KRLWGVVNFLLAVSLAFTFLITKLAESNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPSAITFSVPFAMASIFS 699
            KRLWG VN +LAV LA T L+TK AE +RR       A  +  P  G++ GAL +F +LGIP AITFS+PFA+ASI S
Sbjct:  358 KRLWGAVNIILAVCLAMTVLVTKKAEEHRRI------AGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIIS 429          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC7_ARATH (Putative sucrose transport protein SUC7 OS=Arabidopsis thaliana GN=SUC7 PE=5 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.058e-24
Identity = 61/112 (54.46%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  166 VHSSGGAIRVGPAA-LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKRLWGVVNFLL 498
            V S    I+ G A  LSLLTPYVQLLG+PHKW S IWLCGP+SG++VQP VG+ SD C SRFGRRRP                 YAAD GHS GD +   VK +  VV F L
Sbjct:   35 VASIAAGIQFGWALQLSLLTPYVQLLGVPHKWPSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAADFGHSMGDKIDKPVK-MRAVVIFAL 145          

HSP 2 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:  466 KRLWGVVNFLLAVSLAFTFLITKLAESNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPSAITFSVPFAMASIFS 699
            KRLWG VN +LAV LA T L+TK AE +RR       A  +  P  G++ GAL +F +LGIP AITFS+PFA+ASI S
Sbjct:  357 KRLWGAVNIILAVCLAMTVLVTKKAEEHRRI------AGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIIS 428          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC4_ARATH (Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.095e-24
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  208 LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGD 447
            LSLLTPYVQ LGIPH W+S+IWLCGP+SG+ VQP+VG  SD C S++GRRRP                 +AADIG + GD
Sbjct:   61 LSLLTPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSSDRCTSKYGRRRPFIVAGAVAISISVMVIGHAADIGWAFGD 140          

HSP 2 Score: 37.7354 bits (86), Expect = 1.095e-24
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 2
Query:  152 IVMVASIAAGVQFGWALQLSLF*P 223
            ++ VAS+A G+QFGWALQLSL  P
Sbjct:   43 LLRVASVACGIQFGWALQLSLLTP 66          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUC3_ARATH (Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.352e-23
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  208 LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDS 450
            LSLLTPY+Q LGI H +SS IWLCGPI+G++VQP VG  SD C S++GRRRP                 ++ADIG+  GDS
Sbjct:   81 LSLLTPYIQTLGISHAFSSFIWLCGPITGLVVQPFVGIWSDKCTSKYGRRRPFILVGSFMISIAVIIIGFSADIGYLLGDS 161          

HSP 2 Score: 36.965 bits (84), Expect = 3.352e-23
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 2
Query:  152 IVMVASIAAGVQFGWALQLSLF*P 223
            +V+  ++AAGVQFGWALQLSL  P
Sbjct:   63 LVLSCTVAAGVQFGWALQLSLLTP 86          
BLAST of FC923177 vs. ExPASy Swiss-Prot
Match: SUT_SPIOL (Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  160 GGVHSSGGAIRVGPAA-LSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVK 468
            G V S    ++ G A  LSLLTPYVQLLGIPH W++ IWLCGPISGMIVQP+VG++SD C SRFGRRRP                 +AADIG ++GD   +  K
Sbjct:   39 GLVASVAAGVQFGWALQLSLLTPYVQLLGIPHTWAAYIWLCGPISGMIVQPLVGYYSDRCTSRFGRRRPFIAAGAALVAVAVGLIGFAADIGAASGDPTGNVAK 142          

HSP 2 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  466 KRLWGVVNFLLAVSLAFTFLITKLAESNRRSVTTAGGATHILPPPVGVKVGALAIFTVLGIPSAITFSVPFAMASIFS 699
            KRLWG+VN +LAV LA T L+TK AE  R S    G A    PPP GVK GALAIF VLGIP AITFS+PFA+ASIFS
Sbjct:  371 KRLWGIVNIILAVCLAMTVLVTKSAEHFRDSHHIMGSAVPP-PPPAGVKGGALAIFAVLGIPLAITFSIPFALASIFS 447          
The following BLAST results are available for this feature:
BLAST of FC923177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SUC1_ARATH1.171e-3465.52Sucrose transport protein SUC1 OS=Arabidopsis thal... [more]
SUC5_ARATH2.790e-3363.22Sucrose transport protein SUC5 OS=Arabidopsis thal... [more]
SUC2_ARATH3.883e-2762.89Sucrose transport protein SUC2 OS=Arabidopsis thal... [more]
SUC6_ARATH1.927e-2657.14Putative sucrose transport protein SUC6 OS=Arabido... [more]
SUC9_ARATH1.249e-2556.86Sucrose transport protein SUC9 OS=Arabidopsis thal... [more]
SUC8_ARATH2.783e-2555.36Sucrose transport protein SUC8 OS=Arabidopsis thal... [more]
SUC7_ARATH1.058e-2454.46Putative sucrose transport protein SUC7 OS=Arabido... [more]
SUC4_ARATH1.095e-2456.25Sucrose transport protein SUC4 OS=Arabidopsis thal... [more]
SUC3_ARATH3.352e-2353.09Sucrose transport protein SUC3 OS=Arabidopsis thal... [more]
SUT_SPIOL3.402e-2353.85Sucrose transport protein OS=Spinacia oleracea PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31701H08EF StrClemenN Citrus clementina cDNA clone C31701H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923177 ID=FC923177; Name=FC923177; organism=Citrus clementina; type=EST; length=714bp
GAACACATATTAACGATATTTTGGTAGCTTAATTAGTTGGCTGGCCACGG
AGAGTACCGAAGCAGGCGCAGCTGCAGCAGCACCAACAAAGAATCAATCC
TCAATTGAGTTACGGCAGCCACCACCTCCGCCGTCGTCCCCGATGTGGAA
GATCGTAATGGTGGCGTCCATAGCAGCGGGGGTGCAATTCGGGTGGGCCC
TGCAGCTCTCTCTCTTTTGACCCCCTACGTTCAGCTCCTGGGCATCCCTC
ACAAATGGTCTTCCCTCATTTGGCTCTGCGGCCCCATCTCCGGCATGATC
GTCCAGCCCATCGTCGGCTTCCACAGCGACACCTGCAAATCCCGCTTCGG
CCGTCGCCGCCCCTTCATTCTCGCCGGCGCCGTCCTCGTCGCCATCGCTG
TGTTTCTCATCGGCTACGCCGCCGACATAGGCCACTCCGCGGGCGACTCC
GTTACCGATTCCGTCAAGAGGCTCTGGGGCGTTGTCAATTTCTTGTTGGC
GGTTTCTTTGGCTTTCACCTTTTTGATTACCAAATTGGCCGAGTCCAACC
GCCGGTCCGTCACCACAGCAGGCGGCGCCACCCATATCTTGCCGCCGCCG
GTTGGTGTGAAAGTTGGCGCTTTGGCTATCTTCACTGTGTTGGGAATTCC
NTCAGCTATTACTTTCAGCGTTCCGTTTGCTATGGCATCCATATTTTCTA
GAACTCTGCTGCTG
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