FC923190

Overview
NameFC923190
Unique NameFC923190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923190 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 2
Query:  167 MVQRLTHRTHHNYATKSNQHRVVKTLGGKLLYQRTKKRASGPKCPVTGKRIQGIPHLK 340
            MVQRLT+R  H+YATKSNQHRVVKT GGKL+YQ TKKRASGPKCPVTGKRIQGIPHL+
Sbjct:    1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLR 58          
BLAST of FC923190 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 2
Query:  167 MVQRLTHRTHHNYATKSNQHRVVKTLGGKLLYQRTKKRASGPKCPVTGKRIQGIPHLK 340
            MVQRLT+R  H+YATKSNQHRVVKT GGKL+YQ TKKRASGPKCPVTGKRIQGIPHL+
Sbjct:    1 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLR 58          
BLAST of FC923190 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 2
Query:  167 MVQRLTHRTHHNYATKSNQHRVVKTLGGKLLYQRTKKRASGPKCPVTGKRIQGIPHLK 340
            MVQRL +R+ H+YATKSNQHR+VKT GGKL+YQ TKKRASGPKCPVTGKRIQGIPHL+
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLR 58          
BLAST of FC923190 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 2
Query:  167 MVQRLTHRTHHNYATKSNQHRVVKTLGGKLLYQRTKKRASGPKCPVTGKRIQGIPHLK 340
            MVQRL +R+ H+YATKSNQHR+VKT GGKL YQ TKKRASGPKCPVTGKRIQGIPHL+
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLR 58          
BLAST of FC923190 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 2
Query:  167 MVQRLTHRTHHNYATKSNQHRVVKTLGGKLLYQRTKKRASGPKCPVTGKRIQGIPHLK 340
            MVQRL +R+ H+YATKSNQHR+VKT GGKL YQ T KRASGPKCPVTGKRIQGIPHL+
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLR 58          
The following BLAST results are available for this feature:
BLAST of FC923190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL34_TOBAC5.686e-2386.2160S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL34_PEA7.427e-2386.2160S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL341_ARATH2.161e-2282.7660S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL342_ARATH3.686e-2282.7660S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL343_ARATH1.401e-2181.0360S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC31702A09EF StrClemenN Citrus clementina cDNA clone C31702A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923190 ID=FC923190; Name=FC923190; organism=Citrus clementina; type=EST; length=703bp
GGCAGTGAGGATTCCGTTGAAAATCCATTTCAACAAAATGACTGTTGGTG
GTGTGAAAAAGCGTGCTACCTAGTTTGGGGTTGTTTGATGGAATGGACGG
CAACGATATGGAACCATCACTGTCCTCTGGTTGTTGCTTCGTTGGCCTCC
TCGAAAGTGAACGAAAATGGTTCAACGTCTCACACACCGCACGCACCACA
ACTATGCCACCAAGTCCAACCAGCACCGCGTTGTCAAAACCCTTGGGGGG
AAGCTGCTGTACCAGAGAACCAAGAAGAGAGCAAGTGGGCCTAAGTGTCC
TGTCACTGGAAAAAGGATCCAAGGAATTCCTCACTTGAAATAAATTATTA
ATTTTCTTATAAAATTTTGACTTGTATGAATTATTTACAATGGCATTTTG
TGCCGTTCTATTTAAATGTGAATGGGCATTTGGTTTTTGGTTGAAAGTTT
CTTTACCCAAAAAAAAAAATTGTAACCATCACCGTCGATAGAAATTGTGG
CTGTGGCATGTAGCGTGACAAGCGGCAAGTGAGGGTTTTGTGATTTGTGT
GCAGTTGGGTTTTGGGATGTCAGAGGTTGCGGCGTGGTATCAGGATGGTT
CAAGGGTGATGGTAGCTGTTGTTGGGTGGCGTCGGCGATGGCCAAAGGGG
CGGCAACGGTTTGGGATTGTTGTGAGACAAAGCCGTGTACTTGGGTTATA
TCT
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