FC923211

Overview
NameFC923211
Unique NameFC923211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14412 contig Ccv1_Contig14412:1..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM12_ARATH (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.868e-34
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 2
Query:  170 CDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            CDSVK+H V++     S+ L MKDLLSWV TNLIKERPEMFMKGD+VRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct:   15 CDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM11_ARATH (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.056e-32
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  170 CDSVKVHNVDVVPPKG--SEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            CDS K+H V+V  P G  S+   MK LLSWV TNLIKERPEMFMKGD+VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct:   15 CDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_ORYSJ (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica GN=URM1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.637e-31
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  176 SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            S KVH VD+ P  G  K++MK LL+WV +NLIKERPEMF+KGDSVRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct:   18 STKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_ORYSI (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica GN=URM1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.637e-31
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 2
Query:  176 SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            S KVH VD+ P  G  K++MK LL+WV +NLIKERPEMF+KGDSVRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct:   18 STKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_MAIZE (Ubiquitin-related modifier 1 homolog OS=Zea mays GN=URM1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.629e-29
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 2
Query:  173 DSVKVHNVDVVPPK-GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            +S KVH V+V  PK G  K+ MK LLSWV  NLIKERPEMF+K DSVRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct:   17 NSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_CHICK (Ubiquitin-related modifier 1 homolog OS=Gallus gallus GN=URM1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            D VK H V +  P   E   +++LL W+  NL+KERPE+FM+G+SVRPG+LVL+ND DWEL G+LD  L+++D V+FISTLHGG
Sbjct:   20 DGVKKHQVTL--PSQPEPWDIRNLLKWIKQNLLKERPELFMQGESVRPGILVLINDADWELMGELDYKLQDQDNVLFISTLHGG 101          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_CAPHI (Ubiquitin-related modifier 1 homolog OS=Capra hircus GN=URM1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.785e-21
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 2
Query:  173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            D VK H V +  P   E   ++ LL W+  NL+KERPE+F++GDSVRPG+LVLVND DWEL G+LD  L+++D V+FISTLHGG
Sbjct:   20 DGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDSVRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLHGG 101          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_BOVIN (Ubiquitin-related modifier 1 homolog OS=Bos taurus GN=URM1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.785e-21
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 2
Query:  173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            D VK H V +  P   E   ++ LL W+  NL+KERPE+F++GDSVRPG+LVLVND DWEL G+LD  L+++D V+FISTLHGG
Sbjct:   20 DGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDSVRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLHGG 101          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_HUMAN (Ubiquitin-related modifier 1 homolog OS=Homo sapiens GN=URM1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.637e-21
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            D +K H V +  P   E   +++LL W+  NL+KERPE+F++GDSVRPG+LVL+ND DWEL G+LD  L+++D V+FISTLHGG
Sbjct:   20 DGIKKHRVTL--PGQEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101          
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_MOUSE (Ubiquitin-related modifier 1 homolog OS=Mus musculus GN=Urm1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424
            D VK H V +  P   E   +++LL W+  NL+KERPE+F++GDSVRPG+LVL+ND DWEL G+LD  L+++D ++FISTLHGG
Sbjct:   20 DGVKKHQVAL--PGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGG 101          
The following BLAST results are available for this feature:
BLAST of FC923211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
URM12_ARATH2.868e-3481.18Ubiquitin-related modifier 1 homolog 2 OS=Arabidop... [more]
URM11_ARATH2.056e-3278.16Ubiquitin-related modifier 1 homolog 1 OS=Arabidop... [more]
URM1_ORYSJ8.637e-3175.90Ubiquitin-related modifier 1 homolog OS=Oryza sati... [more]
URM1_ORYSI8.637e-3175.90Ubiquitin-related modifier 1 homolog OS=Oryza sati... [more]
URM1_MAIZE3.629e-2975.29Ubiquitin-related modifier 1 homolog OS=Zea mays G... [more]
URM1_CHICK1.250e-2157.14Ubiquitin-related modifier 1 homolog OS=Gallus gal... [more]
URM1_CAPHI2.785e-2158.33Ubiquitin-related modifier 1 homolog OS=Capra hirc... [more]
URM1_BOVIN2.785e-2158.33Ubiquitin-related modifier 1 homolog OS=Bos taurus... [more]
URM1_HUMAN3.637e-2155.95Ubiquitin-related modifier 1 homolog OS=Homo sapie... [more]
URM1_MOUSE4.750e-2155.95Ubiquitin-related modifier 1 homolog OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC31702C06EF StrClemenN Citrus clementina cDNA clone C31702C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923211 ID=FC923211; Name=FC923211; organism=Citrus clementina; type=EST; length=580bp
GACATGCGAAATTTTATTGAGAACAAGCAAAGGGCTATTATTGTTTTCGT
CAAGTTAACACAACGTTCTCACATCTCTGTTCTTCTAGGGTTTTGCAAAT
TTCTGAAATTTCTGCAAATCTTGAACCATGCAACTGACTCTAGAATTCGG
TGGAGGGTTAGAGCTTCTTTGTGATTCGGTAAAGGTCCATAATGTCGATG
TTGTTCCACCAAAAGGATCAGAGAAGTTGATTATGAAAGATTTGCTTTCT
TGGGTCGGCACCAATTTGATCAAGGAGAGGCCTGAAATGTTCATGAAAGG
AGATTCTGTGAGACCTGGTGTTCTAGTACTTGTGAATGATTGTGACTGGG
AGCTCAGTGGGCAGCTGGATACCACACTGGAGGAAAAGGATGTGGTTGTT
TTTATTTCAACTTTACACGGCGGGTGATAAGCTAAATTATTGTAATTTCT
TAGATGATAAGCACTTGTTATTGAAAATTGGTTGTACCCTTGTCTGGGTA
TTGAGTATGCTTGTTGAAGCATGTGGAATGAGATGAAGATGTTGAATGTT
TACAAAAAAAAAAAAAAAAAAAAAAAAAAA
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