FC923217

Overview
NameFC923217
Unique NameFC923217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923217_ssr41 microsatellite FC923217_ssr41:41..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_LISMO (Bifunctional protein folD OS=Listeria monocytogenes GN=folD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.178e-24
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK +A+EI+  + +EV  + K  GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D +I+
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELVKE-GKQPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIH 91

HSP 2 Score: 48.9062 bits (115), Expect = 3.178e-24
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H+ E K++D +S +KDVDGFHP+N+GNL
Sbjct:   93 ILVQLPLPEHISEEKVIDTISFDKDVDGFHPVNVGNL 129
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_LISMH (Bifunctional protein folD OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=folD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.136e-24
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK +A+EI+  + +EV  + K  GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D +I+
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIH 91

HSP 2 Score: 48.521 bits (114), Expect = 4.136e-24
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H+ E K++D +S +KDVDGFHP+N+GNL
Sbjct:   93 ILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNL 129
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_LISMF (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.136e-24
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK +A+EI+  + +EV  + K  GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D +I+
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIH 91

HSP 2 Score: 48.521 bits (114), Expect = 4.136e-24
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H+ E K++D +S +KDVDGFHP+N+GNL
Sbjct:   93 ILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNL 129
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_LISMC (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=folD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.136e-24
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK +A+EI+  + +EV  + K  GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D +I+
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIH 91

HSP 2 Score: 48.521 bits (114), Expect = 4.136e-24
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H+ E K++D +S +KDVDGFHP+N+GNL
Sbjct:   93 ILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNL 129
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_LISIN (Bifunctional protein folD OS=Listeria innocua GN=folD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.004e-24
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK +A+EI+  +  EV  + K  GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L  +   N+D++I+
Sbjct:    4 IIDGKKLAKEIQEKVTSEVAELVKQ-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPETVTEEKLLKVVEELNEDNTIH 91

HSP 2 Score: 49.2914 bits (116), Expect = 7.004e-24
Identity = 18/37 (48.65%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H+ E K++D +S +KDVDGFHP+N+GNL
Sbjct:   93 ILVQLPLPKHISEEKVIDAISFDKDVDGFHPVNVGNL 129
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_SHEPC (Bifunctional protein folD OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=folD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.009e-23
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  292 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            TA +IDGK+IA+ IR+ + ++V   K++  +VPGLAVILVG    SQ YV +K KACEEVG  S   +    CTEDE+LN + + N D +I+
Sbjct:    2 TAQIIDGKAIAQSIRTKLSEKVTARKEAGQRVPGLAVILVGADPASQVYVGSKRKACEEVGFISRSYDLETNCTEDELLNLIDSLNDDPTID 93

HSP 2 Score: 44.2838 bits (103), Expect = 2.009e-23
Identity = 16/40 (40.00%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAMR 661
            I++++    H+++ K+++ +  +KDVDGFHP N+G LA R
Sbjct:   95 ILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQR 134
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_MOOTA (Bifunctional protein folD OS=Moorella thermoacetica (strain ATCC 39073) GN=folD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.651e-22
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:  295 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            A ++DGK IA E+R+ + +EV R+K   G  PGLAV+LVGE   SQ YVRNK +ACEEVGI S V       ++ E+L  +   N+D  I+
Sbjct:    3 AQILDGKKIAAEVRAEVKEEVSRLKAE-GINPGLAVVLVGEDPASQVYVRNKHRACEEVGIYSEVHRLPAATSQAELLKLIDQLNKDPKIH 92

HSP 2 Score: 48.521 bits (114), Expect = 1.651e-22
Identity = 19/39 (48.72%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAM 658
            I++++    H+DE K++D ++LEKDVDGF P N+GNL +
Sbjct:   94 ILVQLPLPDHIDEKKVIDAIALEKDVDGFSPANVGNLVI 132
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_SHESW (Bifunctional protein folD OS=Shewanella sp. (strain W3-18-1) GN=folD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.147e-22
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  292 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            TA +IDGK+IA+ IR+ + ++V   K++  +VPGLAVILVG    SQ YV +K KACEEVG  S   +    C+EDE+L+ + + N D +I+
Sbjct:    2 TAQIIDGKAIAQSIRTKLSEKVTARKEAGQRVPGLAVILVGADPASQVYVGSKRKACEEVGFISRSYDLETNCSEDELLSLIDSLNDDPTID 93

HSP 2 Score: 44.2838 bits (103), Expect = 2.147e-22
Identity = 16/40 (40.00%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAMR 661
            I++++    H+++ K+++ +  +KDVDGFHP N+G LA R
Sbjct:   95 ILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQR 134
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB9 (Bifunctional protein folD OS=Shewanella baltica (strain OS195) GN=folD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.147e-22
Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:  292 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            TA +IDGK+IA+ IR+ + ++V   K++  ++PGLAV+LVG    SQ YV +K KACEEVG  S   +    C+EDE+L+ + + N+D +I+
Sbjct:    2 TAQIIDGKAIAQSIRTKLSEKVTARKEAGQRIPGLAVVLVGADPASQVYVGSKRKACEEVGFISRSYDLETSCSEDELLSLIDSLNEDPTID 93

HSP 2 Score: 44.2838 bits (103), Expect = 2.147e-22
Identity = 16/40 (40.00%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAMR 661
            I++++    H+++ K+++ +  +KDVDGFHP N+G LA R
Sbjct:   95 ILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQR 134
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_SHEB8 (Bifunctional protein folD OS=Shewanella baltica (strain OS185) GN=folD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.635e-22
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  292 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            TA +IDGK+IA+ IR+ + ++V   K++  ++PGLAV+LVG    SQ YV +K KACEEVG  S   +    C+EDE+L+ + + N D +I+
Sbjct:    2 TAQIIDGKAIAQSIRTKLSEKVTARKEAGQRIPGLAVVLVGADPASQVYVGSKRKACEEVGFISRSYDLETSCSEDELLSLIDSLNDDPTID 93

HSP 2 Score: 44.2838 bits (103), Expect = 3.635e-22
Identity = 16/40 (40.00%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAMR 661
            I++++    H+++ K+++ +  +KDVDGFHP N+G LA R
Sbjct:   95 ILVQLPLPAHIEDSKVIERIRPDKDVDGFHPYNVGRLAQR 134
The following BLAST results are available for this feature:
BLAST of FC923217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_LISMO3.178e-2444.94Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISMH4.136e-2444.94Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISMF4.136e-2444.94Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISMC4.136e-2444.94Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISIN7.004e-2444.94Bifunctional protein folD OS=Listeria innocua GN=f... [more]
FOLD_SHEPC2.009e-2348.91Bifunctional protein folD OS=Shewanella putrefacie... [more]
FOLD_MOOTA1.651e-2247.25Bifunctional protein folD OS=Moorella thermoacetic... [more]
FOLD_SHESW2.147e-2246.74Bifunctional protein folD OS=Shewanella sp. (strai... [more]
FOLD_SHEB92.147e-2244.57Bifunctional protein folD OS=Shewanella baltica (s... [more]
FOLD_SHEB83.635e-2244.57Bifunctional protein folD OS=Shewanella baltica (s... [more]

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Properties
Property NameValue
Genbank descriptionC31702C12EF StrClemenN Citrus clementina cDNA clone C31702C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923217 ID=FC923217; Name=FC923217; organism=Citrus clementina; type=EST; length=684bp
TGTAAAAATCCAACAAGAGGGGTTCATAATATTAATAGCGGATGATGATG
ATGGCTAGAAGAACAATGCGAAGGATGGTGGGGGCAACAGCGTGGCCATG
GGCATGGGCGACGAGGAGTCTAAACCTTAGTGCGATAAATGACAACAGAA
TTATAATGTCACCACCGCTTATCACTCTAGACCTCCCCGAAATTTGGACT
CCTCCTAATTCCCGTGACTGTAATCCTCTCCCACAACGAAATTGCTATCC
TATGTGGTTGATATTTGAGGTTCACCACAGCCAATCTACAGACCGCTACC
GTAATAGATGGAAAGTCCATTGCCGAGGAGATCAGGTCAGGTATAGATAA
GGAAGTAAGGAGAATGAAGAAATCTATCGGAAAAGTTCCTGGCTTGGCTG
TTATTTTGGTGGGCGAAAGAAGGGACTCACAAACTTATGTTCGCAACAAG
ATAAAAGCTTGTGAAGAAGTTGGAATCAAGTCCATTGTAACTGAATTTGC
TGATGGTTGTACAGAAGATGAAGTTCTTAATGCCTTGTCAAATTATAATC
AGGATTCATCAATTAATGCATTTGGATGAGGGAAAGATCTTGGATGTTGT
GAGCTTGGAAAAAGATGTGGATGGCTTCCATCCACTAAATATAGGGAATC
TCGCCATGAGAGGAAGGGGACCACTGTTTATTCA
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