FC923221

Overview
NameFC923221
Unique NameFC923221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12643 contig Ccv1_Contig12643:651..1358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.680e-55
Identity = 105/207 (50.72%), Postives = 140/207 (67.63%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMISGTVLQPL 625
            GFS +AF  +W + +L++ASAVMLCLE+WY   L++ +G L N  +S DA+SICM  L W +   +G++AAISVRVSNELGA +PR A  S+VV  I++              +      F++DA V   V DL PLLA+ I +N IQP+LSGVAIG+GWQA VAYVN+  YY+ G+P+G +LG+K  LGV GIW GMI+G +LQ L
Sbjct:  264 GFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTL 470          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 62/198 (31.31%), Postives = 103/198 (52.02%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGM 598
            GFS +A  N     RL++   +M+C E W F  +   +G L   EL++ ++    + L +   +A G+ AA + RV N +GA + + AK +  V++                T+N +  +F++D +V  LV  + PL+AL  + +N Q V  G+  G G Q     VN   YYL G+P+ +IL +K+D G+ G+W G+
Sbjct:  310 GFSREALKNWGPLCRLAVPGVIMICSEYWAFELVTFASGVLGTTELASMSVLSTTSTLSY--NLAFGVAAAAATRVGNLIGAGNTKLAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSDKDVVALVATIIPLVALINIADNTQCVAGGLLRGQGRQRIGGVVNFIAYYLLGLPVAIILCFKLDWGLYGLWIGI 505          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 64/215 (29.77%), Postives = 114/215 (53.02%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMISGTVLQPLYCSG*FIA 649
            G+S +   +  +F RL++ S +MLC+E W +      +G L   EL A +++  + ++  + M+ +G++ A++VRV N LGA +   AK S  VA++ +              K+    +F++D ++  LV  +TP+ A+  +  ++     G+  G+G Q   A VN   YY+ G+P+G+ L +   LGV G+W G++   V Q +   G FIA
Sbjct:  246 GWSLECLQDWASFFRLAIPSMLMLCMEWWAYEIGSFLSGILGMVELGAQSVTYELAVI--VYMIPMGLSVAVNVRVGNALGAGNIEQAKKSSAVALLVTELIAVVFCVMLLSCKDLVGYIFTSDRDIIALVAQVTPIYAVSHLFESLAGTSGGILRGSGNQKFGAIVNAIGYYVVGLPIGIALMFAAKLGVIGLWLGIVVCAVSQAVCFLG-FIA 457          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 61/205 (29.76%), Postives = 104/205 (50.73%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMISGTVLQ 619
            G+SW+   +  +F+RL++ S +MLC+E W +      +G L   EL A +++  + I+  + M+  G + A +VRV N LGA +   AK S  +++I +              K+    +F+ D ++  LV  + P+ A+  +   +     G+  G G Q   A VN   YY+ G+P+G+ L +   LGV G+W G+I  T  Q
Sbjct:  247 GWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITYELAII--VYMIPSGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDRDIVALVAQVIPIYAVSHLFEGLACTCGGILRGTGNQKVGAIVNAIGYYVIGLPIGIALMFAAKLGVIGLWSGIIICTTCQ 449          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMISGTVLQ 619
            G+S +   +  +F+RL++ S +MLC+E W +      +G L   EL A ++   + I+  + MV  G + A SVRV N LGA     A+ S  V+++ +              K+    +F+ D ++  LV  + P+ A+  +   +     GV  G+G Q   A VN   YY+ G+P+G+ L +   LGV G+W G+I  TV Q
Sbjct:  247 GWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVYELAII--VYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATTLGVMGLWSGIIICTVFQ 449          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: S47A2_HUMAN (Multidrug and toxin extrusion protein 2 OS=Homo sapiens GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 70/228 (30.70%), Postives = 109/228 (47.81%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMISGTVLQPLYCSG*FIAPTGNRRLRLRKKE 688
            G+S +   +   F  L++ S +M+C+E W +       G L   +LSA A  +   +     M+ +G++  + VRV   LGAA    AK S V  V+S               KNQ   +F+ND +V  LV  + P+ ++  V   I  V  GV  G G QA  A VN   YY+ G+PLG++L + V + + G+W GM++   L     +  F+A T     +L  +E
Sbjct:  279 GWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVDLSAQA--VIYEVATVTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGMLACVFL----ATAAFVAYTARLDWKLAAEE 500          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 61/205 (29.76%), Postives = 105/205 (51.22%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMISGTVLQ 619
            G+SW+   +  +F++L++ S +MLC+E W +      +G L   EL A +++  + I+  + M+  G + A +VRV N LGA +   AK S  +++I +              K+    +F+ D ++  LV  + P+ A+  +   +     GV  G G Q   A VN   YY+ G+P+G+ L +   LGV G+W G+I  +V Q
Sbjct:  246 GWSWECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITYELAII--VYMIPAGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDWDIVALVAQVVPIYAVSHLFEALACTCGGVLRGTGNQKVGAIVNAIGYYVIGLPIGISLMFVAKLGVIGLWSGIIICSVCQ 448          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 59/208 (28.37%), Postives = 107/208 (51.44%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMISGTVLQPLY 628
            G+S   F    AF+RL++AS +MLC+E W F   +  AG L   +L+A A+   + I+  + ++ +G+  A S+RV + LGA +   AK S +V +  +              K+    +F++D N+  LV  + P+ + C++ +       G+  G+G     A  +   YY+ G+PLG+ L +   LG+ G W G+++  + Q ++
Sbjct:  261 GWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVLGMVDLAAQAIIYQVAIV--VYLIPLGLCIAGSIRVGHGLGAGNTEQAKRSALVVLCMTELCALLSGILLATLKDVVAYIFTSDPNIVALVSYVLPVYSACLLFDACVAACGGILRGSGKLKVGAISHTVGYYVIGLPLGISLMFAAKLGIIGFWFGILACGIAQSIF 466          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 62/205 (30.24%), Postives = 102/205 (49.76%), Query Frame = 2
Query:    5 GFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMISGTVLQ 619
            G+S +   +  +F+ L++ S +MLC+E W +      +G L   EL A ++   + I+  + MV  G + A SVRV N LGA     A+ S  V+++ +              K+    +F+ D ++  LV  + P+ A+  +   +     GV  G+G Q   A VN   YY+ G+P+G+ L +   LGV G+W G+I  TV Q
Sbjct:  247 GWSLECLQDWASFLHLAVPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVYELAII--VYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATKLGVMGLWSGIIICTVFQ 449          
BLAST of FC923221 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe GN=SPAC11D3.06 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 64/200 (32.00%), Postives = 95/200 (47.50%), Query Frame = 2
Query:    2 NGFSWKAFHNLWAFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELSADALSICMNILGWIVMVAIGMNAAISVRVSNELGAAHPRTAKFSLVVAVISSFXXXXXXXXXXXXTKNQYPSLFSNDANVRELVIDLTPLLALCIVINNIQPVLSGVAIGAGWQAAVAYVNIGCYYLFGIPLGLILGYKVDLGVKGIWCGMI 601
            NG++ +   N   FV+LSL   VM+  E W F  + L AG L    L+A   S+ M     +  +  G+    S RV+  LGA  P  A  +  VA I                +N Y  +F+ND +V +LV  + PL+A   + +++   + G   G G Q   A VNI  YYLF +PLG+ L +    G+ G+W G +
Sbjct:  218 NGWNKRCLENFGPFVKLSLLGIVMVGTEWWAFEIVALVAGKLGAVPLAAQ--SVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVAAIVGVAVGSVIMITMIAVRNIYGRIFTNDPDVIQLVALVMPLVAAFQISDSLNGTMGGALRGTGRQKVGAIVNITAYYLFALPLGIYLAFH-GKGLVGLWIGQV 414          
The following BLAST results are available for this feature:
BLAST of FC923221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TT12_ARATH5.680e-5550.72Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YJ2D_SCHPO2.845e-2231.31Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A1_RABIT1.844e-2129.77Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A1_MOUSE1.844e-2129.76Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_HUMAN4.109e-2130.73Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A2_HUMAN1.195e-2030.70Multidrug and toxin extrusion protein 2 OS=Homo sa... [more]
S47A1_RAT1.195e-2029.76Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_XENTR1.561e-2028.37Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_PONAB2.039e-2030.24Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
YAO6_SCHPO1.726e-1932.00Uncharacterized transporter C11D3.06 OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionC31702D04EF StrClemenN Citrus clementina cDNA clone C31702D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923221 ID=FC923221; Name=FC923221; organism=Citrus clementina; type=EST; length=708bp
GAATGGATTTTCATGGAAGGCCTTTCACAATCTCTGGGCATTTGTTAGGT
TATCTCTTGCGTCAGCAGTCATGCTCTGCTTGGAAGTATGGTACTTTATG
GCGCTGATACTCTTTGCGGGATACCTAAAGAACGCTGAACTGTCCGCCGA
TGCGCTGTCTATTTGCATGAACATATTGGGATGGATCGTTATGGTGGCTA
TCGGAATGAATGCAGCTATCAGTGTGAGAGTCTCAAACGAACTAGGGGCA
GCTCATCCGAGGACTGCAAAATTCTCTTTAGTGGTGGCTGTAATCTCTTC
GTTTCTGATCGGCCTTGTCCTTGCACTCATACTGATCATCACAAAGAACC
AGTACCCGTCCTTGTTTTCAAACGATGCAAACGTTAGAGAACTTGTTATT
GATCTCACACCGTTGCTGGCTCTCTGCATTGTCATTAACAATATTCAACC
TGTTCTCTCTGGTGTGGCCATTGGGGCTGGATGGCAAGCTGCGGTTGCTT
ATGTGAACATTGGATGTTACTATCTCTTTGGCATTCCTCTTGGTCTCATA
TTGGGTTACAAAGTTGACTTGGGAGTCAAGGGGATCTGGTGTGGGATGAT
CTCAGGAACCGTGTTACAACCCTTATACTGTTCGGGATGATTTATAGCAC
CAACTGGAAATAGGAGGCTTCGATTGCGGAAAAAAGAATTAGGTTATGGG
GTGGACAT
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