FC923300

Overview
NameFC923300
Unique NameFC923300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923300_ssr57 microsatellite FC923300_ssr57:57..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: U326_ARATH (UPF0326 protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.502e-74
Identity = 127/170 (74.71%), Postives = 150/170 (88.24%), Query Frame = 1
Query:  217 TKEQNSRGSNHALL---YLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGSFCNCLLPESIQITAVAHLPDRPTYSDDD 717
            + ++    S  A L   YLNVYDLTP+NNYLYWFG+GIFHSGIEAH LEY +GAHEY TSGV+EVEP++CPGFIFRRSVLLGTT++SR++FRS+ME LS KYHGDTYHLIAKNCNHFTEEVC+QLTGK IPGW+NR+AR+GSFCNCLLPESIQ+TAV+ LP+R  +SD+D
Sbjct:   12 SSDERDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLPESIQLTAVSALPERLEFSDED 181          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: PPDE1_RAT (PPPDE peptidase domain-containing protein 1 OS=Rattus norvegicus GN=Pppde1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1
Query:  238 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 657
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: PPDE1_PONAB (PPPDE peptidase domain-containing protein 1 OS=Pongo abelii GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1
Query:  238 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 657
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: PPDE1_PIG (PPPDE peptidase domain-containing protein 1 OS=Sus scrofa GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1
Query:  238 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 657
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: PPDE1_MOUSE (PPPDE peptidase domain-containing protein 1 OS=Mus musculus GN=Pppde1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1
Query:  238 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 657
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: PPDE1_HUMAN (PPPDE peptidase domain-containing protein 1 OS=Homo sapiens GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 1
Query:  238 GSNHALLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 657
            G+N  L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP W+NR+A   S   F    LP+
Sbjct:    2 GANQ-LVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPK 147          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: PPDE1_CHICK (PPPDE peptidase domain-containing protein 1 OS=Gallus gallus GN=PPPDE1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26
Identity = 58/142 (40.85%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  253 LLYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 657
            L+ LNVYD+  +N Y    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P +       F F+ +V+LG+T+    +    +E L  ++ G+ YHL+ KNCNHF+  +   L GK IP WVNR+A   S   F    LP+
Sbjct:    5 LVILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLAYFSSCIPFLQSCLPK 146          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: PPDE1_XENLA (PPPDE peptidase domain-containing protein 1 OS=Xenopus laevis GN=pppde1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 1
Query:  256 LYLNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMA 621
            + LNVYD+  +N Y    G+G+FHSGI+ +G E+ +G H Y  SGVFE+ P         F F+ ++ LG+T+ +  +    +E L  +Y G+ YHL+ KNCNHF+  +   L GK IP WVNR+A
Sbjct:    6 IILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGDTFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRLA 131          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: PPDE1_DANRE (PPPDE peptidase domain-containing protein 1 OS=Danio rerio GN=pppde1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  262 LNVYDLTPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTSGVFEVEPKSCPG----FIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLGS---FCNCLLPE 657
            LNVYD+  +N +    G+G+FHSGIE +G E+ +G H Y  SG+FE+ P         F F+ +++LG+T+ +  +    +E +  +Y G+ YHL+ KNCNHF+  +   L G+ IP WVNR+A   S   F    LP+
Sbjct:    8 LNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGETFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLAYFSSCVPFLQSCLPK 146          
BLAST of FC923300 vs. ExPASy Swiss-Prot
Match: HAG1_SCHPO (UPF0326 protein hag1 OS=Schizosaccharomyces pombe GN=hag1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 1
Query:  256 LYLNVYDL---TPLNNYLYWFGLGIFHSGIEAHGLEYGFGAHEYRTS-GVFEVEPKS-CPGFIFRRSVLLGTTNLSRAEFRSFMEHLSGKYHGDTYHLIAKNCNHFTEEVCMQLTGKCIPGWVNRMARLG 630
            +Y+NVYDL   +P+N   +  GLGI+H+G+   G EY FGAHE   S GVF   P+    G  +R S+ L    L + +    +  LS ++ G +Y L+ +NCNHFT    ++LTG  IP ++NR++R+G
Sbjct:    3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIG 132          
The following BLAST results are available for this feature:
BLAST of FC923300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
U326_ARATH1.502e-7474.71UPF0326 protein At4g17486 OS=Arabidopsis thaliana ... [more]
PPDE1_RAT4.432e-2640.82PPPDE peptidase domain-containing protein 1 OS=Rat... [more]
PPDE1_PONAB4.432e-2640.82PPPDE peptidase domain-containing protein 1 OS=Pon... [more]
PPDE1_PIG4.432e-2640.82PPPDE peptidase domain-containing protein 1 OS=Sus... [more]
PPDE1_MOUSE4.432e-2640.82PPPDE peptidase domain-containing protein 1 OS=Mus... [more]
PPDE1_HUMAN4.432e-2640.82PPPDE peptidase domain-containing protein 1 OS=Hom... [more]
PPDE1_CHICK9.874e-2640.85PPPDE peptidase domain-containing protein 1 OS=Gal... [more]
PPDE1_XENLA6.400e-2542.06PPPDE peptidase domain-containing protein 1 OS=Xen... [more]
PPDE1_DANRE2.432e-2438.85PPPDE peptidase domain-containing protein 1 OS=Dan... [more]
HAG1_SCHPO8.096e-2040.00UPF0326 protein hag1 OS=Schizosaccharomyces pombe ... [more]
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Properties
Property NameValue
Genbank descriptionC31703D04EF StrClemenN Citrus clementina cDNA clone C31703D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923300 ID=FC923300; Name=FC923300; organism=Citrus clementina; type=EST; length=726bp
GTCTCTTCTCTCGCTTTCTAAACCATCAGAACTCAGAAGCTTAAGCACTA
TCCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCCGATCACAGCT
CAATTTGATCTCTCTTTGATGTATGATGATGAGCTGCTGATTTAGAATTA
AACCATTTGGGGGAGTGGTTTCTGAATACAATGCGGTTCTTCTCATCAAG
CTCAAGCTTTAGTCTGACAAAGGAGCAGAATAGCAGAGGGAGCAATCATG
CATTGTTGTATCTCAATGTCTATGATCTTACACCACTGAACAACTACCTT
TACTGGTTTGGGCTCGGGATATTCCATTCGGGTATCGAAGCTCATGGTTT
GGAATATGGCTTTGGTGCTCATGAGTACCGTACCAGTGGAGTTTTTGAAG
TTGAACCGAAAAGTTGTCCTGGCTTCATCTTCAGACGGTCAGTGTTGCTG
GGTACCACCAACCTGTCTCGTGCAGAATTTCGCTCCTTCATGGAACACCT
TTCTGGAAAATATCATGGGGACACTTATCATTTGATTGCCAAGAATTGTA
ACCATTTTACAGAAGAAGTCTGTATGCAGCTAACTGGAAAGTGTATTCCA
GGATGGGTTAATCGGATGGCTCGATTAGGTTCATTCTGCAATTGTCTGCT
GCCAGAGAGTATTCAGATCACAGCAGTTGCACATCTTCCTGATCGTCCCA
CATATTCTGATGATGATATATTGGAA
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