FC923312

Overview
NameFC923312
Unique NameFC923312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.814e-50
Identity = 85/125 (68.00%), Postives = 107/125 (85.60%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESISNF 377
            GGFE++++Q F T  NETLKKTFACYLST+TGPVAGT+YLSN  VAFCSDRPL FTAPSGQ++WSYY+V++PLA +  +NPV+++E   EKYIQ+ T+DGH+FWFMGF NY+KAT HL  S+S+F
Sbjct:  139 GGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDF 263          
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.576e-33
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESI 368
            GG+E I++QTF T   E L  +FACYLSTS GPV G LY+S+  +A+CSD PLS+     Q  WSYYKV++PL  + A+NP     N +EKYIQ++++D HEFWFMGF NYD A   L +S+
Sbjct:  171 GGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKN-GDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291          
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.496e-33
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKT-WSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESISN 374
            GG+E ++KQTF    +E L KT+ACYLSTS GPV G +YLS   +AF SD PLS+    G++T WSYYKV+LP   + A+NP   R N+S+KYIQ+++ID HEFWFMGF  Y+ A + L E++ +
Sbjct:  134 GGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYK--EGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQS 256          
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESIS 371
            GG E IYK+ F     E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G+    +YKV +PL  I  +N        S+KY+++VT+DG +FWFMGF +Y KA   L +++S
Sbjct:   92 GGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALS 214          
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESISN 374
            GG E IYK+ F     E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G  +  +YKV +PL  I  +N     +  S+KY++IVTID  +FWFMGF +Y KA   L ++++N
Sbjct:   92 GGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALNN 215          
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.977e-25
Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESIS 371
            GG E IYK+ F     E L K + CYLST+ G +AG L++S+  +AFCS+R +  T+P G  T  +YKV +PL  I  +N     +  S++Y+++VT+D ++FWFMGF +Y KA   L ++++
Sbjct:   84 GGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALN 206          
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.977e-25
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESI 368
            GG+E I++QTF T   E L+ +FACYLSTS GPV G LY+S   +A+CSD  L               V++PL  + ++NP I   N +EKYIQ++++D HEFWFMGF NY+ A   L +++
Sbjct:  124 GGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTL 230          
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.582e-25
Identity = 52/123 (42.28%), Postives = 79/123 (64.23%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSFTAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESIS 371
            GG E I+K+ F   + E L K + CYLST+ GP+AG L++S+  +AFCS+R +   +P G     +YKV +PL  I  +N     +  S+KY+++VT+DG +FWFMGF +Y KA   L +++S
Sbjct:   91 GGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213          
BLAST of FC923312 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 48/125 (38.40%), Postives = 75/125 (60.00%), Query Frame = 3
Query:    3 GGFETIYKQTFATHQNETLKKTFACYLSTSTGPVAGTLYLSNVHVAFCSDRPLSF-TAPSGQKTWSYYKVMLPLAMIGAINPVIMRENSSEKYIQIVTIDGHEFWFMGFGNYDKATRHLSESISN 374
            GG E ++++ F     E L  +F CY+ST++GPV G +Y+SN  +AFCSD  +   ++  G    +YYKV++    I +I+        SE+Y+ +VT DG EFWFMGF +Y  A   L++++ N
Sbjct:  102 GGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKALLN 226          
The following BLAST results are available for this feature:
BLAST of FC923312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH8.814e-5068.00GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH2.576e-3353.28GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH7.496e-3352.80GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML8_ARATH1.369e-2643.09Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH3.984e-2643.55GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH1.977e-2541.46GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML3_ARATH1.977e-2545.08Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML4_ARATH2.582e-2542.28GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH2.117e-1938.40GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
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Properties
Property NameValue
Genbank descriptionC31703F01EF StrClemenN Citrus clementina cDNA clone C31703F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923312 ID=FC923312; Name=FC923312; organism=Citrus clementina; type=EST; length=598bp
GAGGAGGGTTTGAGACTATATACAAGCAAACTTTTGCAACCCACCAGAAT
GAGACTTTGAAGAAGACATTTGCCTGTTACCTTTCAACATCAACAGGACC
AGTGGCTGGAACTCTGTATCTCTCCAATGTTCATGTGGCTTTTTGCAGCG
ATCGCCCCCTGTCTTTCACTGCACCCTCTGGTCAGAAGACTTGGAGCTAC
TACAAGGTTATGTTACCTTTGGCCATGATTGGTGCCATCAATCCAGTGAT
CATGAGGGAAAATTCTTCCGAGAAATACATCCAGATTGTTACAATCGATG
GGCACGAGTTTTGGTTCATGGGGTTTGGTAATTATGACAAAGCAACTCGG
CACCTTTCCGAAAGTATCTCAAATTTTGTAGCTACTGGCATAGCGGTTCA
ACCAAATGGTGCTTGATCTGAGAGCGGTCGTTTTTGTTAGTTGCTCTTTT
TGTGAATTCCATCAGAGATTAGTTTCTGTTTCGGTTTCTCTTTTTCTGCC
TTGATTATGTAAGCATGGATTTGTTGTACTGTAACCAATTCTTATCCTTG
TGGTTTCATAAATACCTCGTTTGAGTTTACCTAATAAAGCCAGTGTAA
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